Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2758 ATGGGTAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAGGGGCCATGGTCTCCTGAAGAAGATGCAAAGCTAAAGGAGTACATAGAGAAACATGGGACTGGAGGGAATTGGATTTCCCTCCCACAAAAAGTTGGTTTGAAAAGATGTGGCAAGAGCTGTAGGCTAAGATGGCTTAATTATCTCAGACCCAACATTAAGCATGGGGAGTTCTCTGAAGCAGAAGACAGAATAATCTGCAGCCTCTTTGCTACCATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATAAAGAACTACTGGAACACCAAGCTTAAGAAGAAAATGATGGCCATGAATCCGTCACCTCATCAGAGTAAGCCTCAACAAGTCACCCTTTTATCCATGTTAAAAAACTCGACATCATCCTCATCATCATCTCCACCATTATCATTCAGAGACAGCAACAGTTCCTCCTACTACCACCCTCAGGGGTCTAATAATTTCAATGCCTCTGGATCCTATTCATACTCATCAAGTCTTTTGAGTGGAAACTCTTCTACTTCTTCTAACTCCACTTTTCAAACTCAAGAAAGTTTTATGTGTCACACTCAAAATTGCCAATTCAAAGATAGCAATAGCATCTATATTTTCAAGGGTGAAGCTACTAGCTGTAGCTCCTCTGATGGGAGCTGCAACAACCAGATGAGTCATGTCATAGAGCCAGAGTTTGGATATGGAGAAGGGCATGGTGGTGATGGAACTTTTGTTGATCAGATAGGTGTGGCTAATTATATCTATAGTGGTATTGAAGATACCCAGAAATTGATGCACTCCAATGCTGCCGGTAGTGTTAGTTGTGGGTGGACACAGAAACAAAGTGGACTGTGGGCAGAAAATCCAATGGATTATGGTCTAGAAGAAATCAAAGAGCTAATAAGCACTAGTACTTGCAACAACTTTTTGTTTGATGAAAAGAAGACAGAGGAAAGGTTCATGTACTACTGA 1011 0.4174 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWISLPQKVGLKRCGKSCRLRWLNYLRPNIKHGEFSEAEDRIICSLFATIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNPSPHQSKPQQVTLLSMLKNSTSSSSSSPPLSFRDSNSSSYYHPQGSNNFNASGSYSYSSSLLSGNSSTSSNSTFQTQESFMCHTQNCQFKDSNSIYIFKGEATSCSSSDGSCNNQMSHVIEPEFGYGEGHGGDGTFVDQIGVANYIYSGIEDTQKLMHSNAAGSVSCGWTQKQSGLWAENPMDYGLEEIKELISTSTCNNFLFDEKKTEERFMYY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2758 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Dod01g2758 336 MobiDBLite consensus disorder prediction 138 160 - -
Dod01g2758 336 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Dod01g2758 336 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Dod01g2758 336 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Dod01g2758 336 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 243 - -
Dod01g2758 336 SMART sant 13 64 IPR001005 -
Dod01g2758 336 SMART sant 67 115 IPR001005 -
Dod01g2758 336 CDD SANT 16 62 IPR001005 -
Dod01g2758 336 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Dod01g2758 336 Gene3D - 7 68 - -
Dod01g2758 336 Gene3D - 69 139 - -
Dod01g2758 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod01g2758 336 CDD SANT 70 113 IPR001005 -
Dod01g2758 336 PANTHER OS09G0431300 PROTEIN 1 243 - -
Dod01g2758 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2758 Dod-Chr1 67370220 67372325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2758 1 268 MYB Transcription Factor Family AT5G57620 47.482 6.88e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g2758 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2758 K09422 - gmx:778084 436.417