Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2727 ATGGGCAACATATCGAGCAGCGGCGACGGCCGCCGTCGCCGTCATAACAGCACCTCAAGGCGGACACATCATCCGGTGACTCCACAGCCGGAAATCACGGCGAACCGATTCGTGTACCCTGGAGCCGCACCGTACCCGCCACCTCCACAGTACCCGAACCCGAACCCGAACCCTCCGATGCATTACCCGCAGTACCATTACCTCGCTCACTACCCTCCGCCAACGCCGATGCCCTTCCCCCACCACCCTCACCCTCCTCACATTGAGCCCGGCTGGATTGCGGGCCGAGGGTACCCTTGCGGGCCCGTGGTGCCACAGCCCGCGCCTTACGTGGAGCACCAAAAAGCCGTTACCATAAGGAACGATGTTAATATCAAAAGGGAGACGCTTAAGATCGAGCCCGATGAGGAAAACCCTGGCCGCTTCCTCATCTCGTTCACGTTCGACGCCACCGTTGCTGGGTGCATCAGCATATTTTTCTTTGCAAAAGAAGTTGAAGGCTGCGCCCTCACACCTGTGAAGGAAGGCCTTCTTGAACCTGTGACTGTTAATTTCCAGCAAGGTCTTGGCCAGAAGTTTAAGCAGCCTGCTGGAACTGGTATTGACTTTTCAATGTTTGAGGAGTCAGAGATATTGAAAGTGGGTACCGCAGATGTTTACCCTCTAGCAGTGAAGGCAGAGTCATCCTCTGTTAATCCTGATGTATCAGATGGAACTCCAACACCTAGTAACATAAACTCTCAGATAACCCAAGCAGTGTTTGAGAAGGAGAAAGGGGAATTCCATGTGAAAGTTGTTAAGCAAATCCTGTCGGTATATGGAGTTAGATATGAGCTGCAGGAGATATATGGTATTGGAAATTCAACGGACAGTGATGTGGATGAGAATGACCAAGGAAAAGAGTGCGTCATCTGCTTGTCAGAGCCTCGGGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGTAGCGATTGTGCAAAGGTTTTGAGGCACCAGACAGATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGCAGATAAATGTAAGGCCTGAGGAGTGA 1071 0.5182 MGNISSSGDGRRRRHNSTSRRTHHPVTPQPEITANRFVYPGAAPYPPPPQYPNPNPNPPMHYPQYHYLAHYPPPTPMPFPHHPHPPHIEPGWIAGRGYPCGPVVPQPAPYVEHQKAVTIRNDVNIKRETLKIEPDEENPGRFLISFTFDATVAGCISIFFFAKEVEGCALTPVKEGLLEPVTVNFQQGLGQKFKQPAGTGIDFSMFEESEILKVGTADVYPLAVKAESSSVNPDVSDGTPTPSNINSQITQAVFEKEKGEFHVKVVKQILSVYGVRYELQEIYGIGNSTDSDVDENDQGKECVICLSEPRDTIVHPCRHMCMCSDCAKVLRHQTDRCPICRQPVERLLQINVRPEE* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2727 356 MobiDBLite consensus disorder prediction 41 59 - -
Dod01g2727 356 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 355 - -
Dod01g2727 356 Pfam Zinc finger, C3HC4 type (RING finger) 300 346 - -
Dod01g2727 356 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 301 341 IPR045195 -
Dod01g2727 356 MobiDBLite consensus disorder prediction 1 59 - -
Dod01g2727 356 SUPERFAMILY RING/U-box 301 347 - -
Dod01g2727 356 ProSiteProfiles Zinc finger RING-type profile. 302 341 IPR001841 -
Dod01g2727 356 PANTHER MAHOGUNIN 1 355 IPR045194 GO:0061630
Dod01g2727 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 352 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2727 Dod-Chr1 66854114 66857132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2727 93 321 C3H Transcription Factor Family AT3G09770 60.426 3.25e-92 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2727 - - aprc:113862864 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2727 01 66854114 66857132 Dod01g2727 01 66854114 66857132 ECH