Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2721 ATGACTTCAGATGCTGAAAAGGCTTCCATGCTAACACTTGAAGGTTCTTCCAAAGAGGCACCTAAAAAGCCTATGATTTCAAGGACATTGTCTCTTACAAAGTTGCTCACACCTAGAGGGAAGAAAATGTCTTCTTTACCTGTAACCCCAATTGCTCAGTCAAATCCAGAGTGTGCCCATGGAGGGGATGCAGCCAATCCAACATCATCTGTGAAAAAGGGACAGCAATCATCAATTCATCGTTCCCGTTCAGTTCCTGTGCTTACCAAAGATGGGAACCCATCTGTAGGCATCATGTTTCGTATAGTTCCTACCACGCCACGGTTGGCTGCTAGCACTGCCACAACATCTATGAAATCTTCACCCGAGGATACTGTTAAAGATGAGGATAGGGAAGATATACCTGAAGAAGAAGCTGTCTGCAGAATTTGTTTGGTTGAACTGGGAGAAGGTGCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCGCACAAAGAGTGTGCAGTTAAATGGTTCAGCATTAAAGTGGAGGAGAAGGTGGCTTGCTCAGTTGAATCAGCAGCAGCGGCATGGCTCCCCAGAGTCATCACATTTGGAACACAGCGGTTTCATTACGAAGGTTAA 639 0.457 MTSDAEKASMLTLEGSSKEAPKKPMISRTLSLTKLLTPRGKKMSSLPVTPIAQSNPECAHGGDAANPTSSVKKGQQSSIHRSRSVPVLTKDGNPSVGIMFRIVPTTPRLAASTATTSMKSSPEDTVKDEDREDIPEEEAVCRICLVELGEGADTLKMECSCKGELALAHKECAVKWFSIKVEEKVACSVESAAAAWLPRVITFGTQRFHYEG* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2721 212 MobiDBLite consensus disorder prediction 68 84 - -
Dod01g2721 212 SMART ringv_2 140 191 IPR011016 GO:0008270
Dod01g2721 212 CDD RING_CH-C4HC3_MARCH 141 180 - -
Dod01g2721 212 PANTHER OS02G0165000 PROTEIN 2 181 - -
Dod01g2721 212 MobiDBLite consensus disorder prediction 1 90 - -
Dod01g2721 212 ProSiteProfiles Zinc finger RING-CH-type profile. 133 197 IPR011016 GO:0008270
Dod01g2721 212 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 181 - -
Dod01g2721 212 Pfam RING-variant domain 141 188 IPR011016 GO:0008270
Dod01g2721 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 191 IPR013083 -
Dod01g2721 212 MobiDBLite consensus disorder prediction 111 132 - -
Dod01g2721 212 SUPERFAMILY RING/U-box 137 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2721 Dod-Chr1 66649653 66653240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2721 71 180 C3H Transcription Factor Family AT2G37950 30.328 1.24e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2721 - - gmx:100789854 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2721 01 66649653 66653240 Dod01g2721 01 66649653 66653240 ECH