Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2718 ATGATTAATCTCGTCGGTTTATCATTGCTGCCGATGGAATCGGTAGCGTGCAGGGGATTGCTTTACGCGCTATTCATACTCAATTTTGTTTTGGTTTGCCAACTCCTTCTCCTTCACCCTCTCGTTTCTGCTTCAGGTGGAAAATCTGGAAATGCTGCTGAGTTGTTTGAGAGGGTAGCAGAAAGTATAAAAGTGAAACATTATACTGAGGCACTTAATGATCTAAATGCCGCTATAGAAGTAGATCCAAATCTTTCAAAAGCATACCATCTCCGTGCATCAGTTCTTCGTCAGTTATGCAGATATGATCAATCTGAGAGGAGCTACAAAAAGTATCTGGAGTTAAAACCTGGAGATTCAGCTGCAGAAAAGGAGCTATCTCAGCTGTTGCAGGCTAAGAGTGCCCTAGAAACAGCTCAGTCCCTCTATGGTTCGGGCAACTTCACAAAATCCTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGCTTGCAGTGAGGCTAAGCTTCTCAAAGTTAAGTTGTTGATAGCTGATAAAGAGTATGAGGGTGCCATTGCTGAGTCCGGGTTTATGCTCAAAGAAGATGAAAATAATTTAGAGGCGTTGTTGTTGCGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCAACCAGGCATTTCCAAAAAGGTCTCCGCCTAGATCCAGAGCACATTGAACTTAAAAAGGCATATTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCCGAAGATAATGCTAGTAAGGGTAAGCTACGTGTTGCAGTGGAGGAATTCAGAAGTGCACTTGCAGTTGACCCTGACCATCTTGCACATAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTAAACAGTTGCAGTGAAGCTCTTAAGATCAATGAGGAGCTTCTTGAAGCTCTGGTGCAGAGGGGAGAAGCTAAACTTTTAATAGAGGATTGGGAGGGAGCTGTTGAGGACCTGAAATCAGCTGCTCAAAAGTCTCCTCAGGATATGAATATCCGTGAAACATTAATGAGGGCTGAGAAAGCTCTAAAGATGAGCAAACGCAAGGATTACTACAAGATTTTGGGAATTTCAAAAACAGCTTCTGCATCAGAGATAAAACGTGCATACAAGAAACTGGCTTTGCAATGGCACCCAGATAAGAATGTCGACAACAGGGAAGAAGCAGAGGCACAATTCCGAGAAATTGCTGCTGCATACGAGGTTCTCAGTGATGAAGACAAACGCACAAGATACGACAGAGGGGAGGACCTTGAAGAATCGGGAATGGGTGGTGGCAGCAATGGTTTCAATCCCTTTGGTGGTGGTGGGTTTGGTGGGCAGCAGTTTACCTTCACCTTTGATGGTGGCTTCCCTGGTGGCGGTGGCTTTCCTGGTGGTGGATTCGGAGGAGGCTTTCCTGGCGGGTATGAGTTCCATTTTTGA 1494 0.4364 MINLVGLSLLPMESVACRGLLYALFILNFVLVCQLLLLHPLVSASGGKSGNAAELFERVAESIKVKHYTEALNDLNAAIEVDPNLSKAYHLRASVLRQLCRYDQSERSYKKYLELKPGDSAAEKELSQLLQAKSALETAQSLYGSGNFTKSLEYIDKVVLVFSPACSEAKLLKVKLLIADKEYEGAIAESGFMLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHIELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFRSALAVDPDHLAHNVHLHLGLCKVLVKLGRGKDALNSCSEALKINEELLEALVQRGEAKLLIEDWEGAVEDLKSAAQKSPQDMNIRETLMRAEKALKMSKRKDYYKILGISKTASASEIKRAYKKLALQWHPDKNVDNREEAEAQFREIAAAYEVLSDEDKRTRYDRGEDLEESGMGGGSNGFNPFGGGGFGGQQFTFTFDGGFPGGGGFPGGGFGGGFPGGYEFHF* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2718 497 Gene3D DnaJ domain 371 480 IPR036869 -
Dod01g2718 497 PRINTS DnaJ domain signature 431 450 IPR001623 -
Dod01g2718 497 PRINTS DnaJ domain signature 393 408 IPR001623 -
Dod01g2718 497 PRINTS DnaJ domain signature 375 393 IPR001623 -
Dod01g2718 497 PRINTS DnaJ domain signature 411 431 IPR001623 -
Dod01g2718 497 SMART tpr_5 86 119 IPR019734 GO:0005515
Dod01g2718 497 SMART tpr_5 52 85 IPR019734 GO:0005515
Dod01g2718 497 SMART tpr_5 319 352 IPR019734 GO:0005515
Dod01g2718 497 SMART tpr_5 285 318 IPR019734 GO:0005515
Dod01g2718 497 SMART tpr_5 201 234 IPR019734 GO:0005515
Dod01g2718 497 ProSiteProfiles dnaJ domain profile. 373 439 IPR001623 -
Dod01g2718 497 SMART dnaj_3 372 431 IPR001623 -
Dod01g2718 497 CDD DnaJ 373 428 IPR001623 -
Dod01g2718 497 Gene3D Tetratricopeptide repeat domain 46 370 IPR011990 GO:0005515
Dod01g2718 497 Pfam Bacterial transcriptional activator domain 249 364 IPR005158 -
Dod01g2718 497 SUPERFAMILY Chaperone J-domain 366 479 IPR036869 -
Dod01g2718 497 Coils Coil 409 429 - -
Dod01g2718 497 ProSiteProfiles TPR repeat profile. 86 119 IPR019734 GO:0005515
Dod01g2718 497 Pfam DnaJ domain 373 436 IPR001623 -
Dod01g2718 497 SUPERFAMILY TPR-like 63 368 IPR011990 GO:0005515
Dod01g2718 497 Pfam Tetratricopeptide repeat 87 118 IPR019734 GO:0005515
Dod01g2718 497 ProSiteProfiles TPR repeat profile. 201 234 IPR019734 GO:0005515
Dod01g2718 497 ProSitePatterns Nt-dnaJ domain signature. 416 435 IPR018253 -
Dod01g2718 497 Pfam Tetratricopeptide repeat 202 234 IPR013105 -
Dod01g2718 497 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 11 497 IPR044620 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2718 Dod-Chr1 66633290 66637673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2718 369 436 C2H2 Transcription Factor Family AT1G74250 48.611 7.56e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2718 K09523 - gmx:100804685 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2718 01 66633290 66637673 Dod01g2718 01 66633290 66637673 ECH