Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2717 ATGATTCCCGGTGACCCCTTTTCACTACCCACTTCTCTAGCAGGGCTCTCCCCAGAGCAAAACACAAACCCTAACCCTAAACCTAATAATAATCCCCCTCCACCCTCCAAGAAAAAGAGAAATCTACCGGGAACACCAGATCCAGATGCCGAGGTCATTGCACTTTCGCCGAAAACTCTCATGGCAACCAACCGTTTCGTCTGCGAGATATGCAACAAAGGGTTCCAGAGAGACCAGAACCTTCAGCTTCACAGGAGGGGGCACAACCTTCCATGGAAGCTGCGTCAGAGGACCAACAAGGAGCTGGTCAAGAAGAAGGTTTACATCTGTCCGGAGAAGACCTGTGTCCACCACGACCCTGCCAGGGCACTCGGCGACCTCACTGGGATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAGTACGCGGTCCAATCTGATTGGAAAGCTCACACCAAAACCTGCGGCACAAGAGAGTATAAATGTGACTGTGGCACCGTCTTTTCCCGGAAGGACAGCTTTATTACACACAGGGCTTTCTGCGATGCCTTGGCTGAAGAGAGCGCAAGGATCACCTCAGTTTCTAATACTTCCACGAATCTGAGTTTCAAAAGCGAAGAGGCAACAACAAATAACGTGATGAGCACACAGCCTCATCCTGGTATGGCACATGGACTAAGGGCTAATCAGGGAGTTCTTAATGTTGTTGGAGGGGTTCCTCATCAGTTTGGTCCACACGGATTTCGTCTTGATTTCAATGGAATTGGAATGGTTGCAGAACAACAACAAATTAGGCCTAATAATTTGTCATTGTGGCTGAACCAGGGAATTGATGTTATGTCATCAAGCTCTTCTAAGTCTGGTTTCCCTGAGGTTGTGCAAATGGCTCAAGCGAGTGGTAATAATAATGCCTTAATTGGTTCCTCTCCTATGTTGCCTAATTTTGGAATGCCTGCTCCCAATTCAGATGGTGCAAGCCTTTCACCATCCCCACTACCTATTGGGAGAAAAGTAGAAGCTGGTGATGCAGCTTCAGATTTGGCATCTATTTATTCTCAGAGTCAAAATAAGCGCTCATCAAACCCATCAGCTTCTCCGATGTCAGCAACTGCACTTCTGCAGAAAGCAGCTCAGATGGGTTCCACCAGAGGCACCAACCCTTCAACTTTCAGTGGCAGTTTTGGAGTAATGACCTCATCTTCCGTTCAAAGTACTAGCCTCAGTAACAATAATGTGAATCAAAACCGCAGCGAGCTTAATGATCAGGCCTTTCATGATGAGAACATGAAGCAATCAGAGTGTTTTATTAGTCCAAGTAGCAGTGCAGCTATGATGGGTAGTTCTACTTATAACTTTAGCTCATTGGCACATTCATCACACAGTTTTGATCAATTTGTGATGCAAGGCAATGTTAGTAACACTGCGGAACATAATTTGACAAGAGATTTTCTAGGCATGAGTAGAGGAGGAGGTGGCCCTCCATTCCTACCCCAAGAGCTGGCGAAGTTTGCTTCGTCAGTGGGCTTGAGCCAATTCACTGCAGGCCATCAATGA 1584 0.4684 MIPGDPFSLPTSLAGLSPEQNTNPNPKPNNNPPPPSKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKELVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTVFSRKDSFITHRAFCDALAEESARITSVSNTSTNLSFKSEEATTNNVMSTQPHPGMAHGLRANQGVLNVVGGVPHQFGPHGFRLDFNGIGMVAEQQQIRPNNLSLWLNQGIDVMSSSSSKSGFPEVVQMAQASGNNNALIGSSPMLPNFGMPAPNSDGASLSPSPLPIGRKVEAGDAASDLASIYSQSQNKRSSNPSASPMSATALLQKAAQMGSTRGTNPSTFSGSFGVMTSSSVQSTSLSNNNVNQNRSELNDQAFHDENMKQSECFISPSSSAAMMGSSTYNFSSLAHSSHSFDQFVMQGNVSNTAEHNLTRDFLGMSRGGGGPPFLPQELAKFASSVGLSQFTAGHQ* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2717 527 Gene3D Classic Zinc Finger 44 119 - -
Dod01g2717 527 Gene3D Classic Zinc Finger 122 200 - -
Dod01g2717 527 SMART c2h2final6 108 138 IPR013087 -
Dod01g2717 527 SMART c2h2final6 143 163 IPR013087 -
Dod01g2717 527 SMART c2h2final6 66 88 IPR013087 -
Dod01g2717 527 PANTHER ZINC FINGER PROTEIN JACKDAW 5 516 IPR033243 GO:0003700
Dod01g2717 527 MobiDBLite consensus disorder prediction 1 50 - -
Dod01g2717 527 MobiDBLite consensus disorder prediction 384 404 - -
Dod01g2717 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Dod01g2717 527 MobiDBLite consensus disorder prediction 325 347 - -
Dod01g2717 527 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
Dod01g2717 527 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Dod01g2717 527 MobiDBLite consensus disorder prediction 25 41 - -
Dod01g2717 527 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Dod01g2717 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2717 Dod-Chr1 66620002 66622915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2717 1 514 IDZ Gene Family AT5G03150 46.113 3.69e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2717 zf-C2H2 0.0054 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2717 K25870 - gmx:100812495 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2717 01 66620002 66622915 Dod01g2717 01 66620002 66622915 ECH