Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2714 ATGGGGCATAGACACTTATATGGCGCACCCCCAATGTTTGAGGGTGAGCCTGACCCAAATTGGAGTCATATGCATACTGATCAACATTATGTGCACCTTGGTAGGACTAGCACTTCCGAGAATGGTTCCTTTATTTATCCTGTGGAAAACATGTCTATAGACAGCATTTCTTTCCCTTCTCATTGGAACTCTGCCACAAGGTCAAATGGTTATGCATCCTCAAGTGTTAACATGGAAGTACCTCCTCATCAATCGGATGCATCAGGCTCATCTAATGATCATTTTACACATTCAACAACTGCTGGAGCTTTCTTTCCTGTGTCTGAAAATTATGCACACCACCCTTCTTCTAATTATGACAGACAAGCTTTTCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAACAGGGCGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTCCAGTCTGTGAGAGAGGCAGTTCTAGCAGGTACTTCAATGCTGGGAGCTCAACTGATCTTTCTATGTCTTCAGAATTACGCCCAGAGAAAGCAAATATGGATTCTCAATATATGCCTTGGGATCATGTTACTATGACACCCGCATTTAGAGGTGGTGGCCTTTCAATAAGGGGTGAGGGTTCTTCAAGGAACGTGAGGAGTCGTTCTGCACTTGATTTGGAATCCAATCTGGCCAGGACCCATTTATCCAGTAATCATTCACACAACTCCTACACCACTGCCCCGCCAGTTGACCATTCTAGCATGGTGGATCTTTCAGGTCAGACTTCTAACACTTTGACGAGGGATTGGAGCCAAATGAACACATCTTCTGCTCATGGAAGGGTGTTATTATCAGATGCAAGTGCTTTTAGTCTCGAAACAAGTCACTTCCTTGTTGGATCTGGTGCTACTGCTAGTAATGCTTCTGTGGATGTTGGAGGTTTCCATCCTGAATTTGGTCCAAGCAGAAATCCTATTGCCCCTCAAATTTTTCATAATAATCCAACTCAGACTGCTAGAGGAGTTCGAAGCAACTATTCTCAGAGATCCACTCCAGCTTTTAGGGCTTCTTCAGGCTTGCGCTTGGGACATGTGACACCTTCAGATGATGGATTGCCTATGGTAGCTGAAAGTCACTCTTCTAGACATCCAAGGCCGTTGACCACCATTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAGATAGATATCGATCATTGGCTGATGAGGTTGGTCTCCATGATCAATTTTCCTCTGAGGGTTTCATGATTGTTGAGCGTGCATCACTCTATGGTTCTAGGAATATGCATGATCAGCACAGAGACATGAGGATGGACATTGATAACATGAGCTATGAGGAGCTACTTGCTCTTGGGGAGAGGATTGGTCATGTGAATACAGGATTATCTGAAGATTTGCTTTCCAAGTGTGTGACGGAGACTATATATTGTTCATCTGATCAAAGTCAAGACGAAGGAAATTGTGTTATCTGTCTTGAAGAGTACAAGGACATGGATGATGTTGGGACACTTAAATCTTGTGGGCATGACTACCATGTGAGCTGCATTAAGAAGTGGTTATCTATGAAGAAACTGTGTCCTATCTGCAAAGCTTCTGCATTGCCCGAGGATACAAACGATAAATAA 1641 0.4394 MGHRHLYGAPPMFEGEPDPNWSHMHTDQHYVHLGRTSTSENGSFIYPVENMSIDSISFPSHWNSATRSNGYASSSVNMEVPPHQSDASGSSNDHFTHSTTAGAFFPVSENYAHHPSSNYDRQAFHVDGGFIDLTMGTGRGPHKRKSPGIPPVCERGSSSRYFNAGSSTDLSMSSELRPEKANMDSQYMPWDHVTMTPAFRGGGLSIRGEGSSRNVRSRSALDLESNLARTHLSSNHSHNSYTTAPPVDHSSMVDLSGQTSNTLTRDWSQMNTSSAHGRVLLSDASAFSLETSHFLVGSGATASNASVDVGGFHPEFGPSRNPIAPQIFHNNPTQTARGVRSNYSQRSTPAFRASSGLRLGHVTPSDDGLPMVAESHSSRHPRPLTTIGWRNGDRNGRSRDRYRSLADEVGLHDQFSSEGFMIVERASLYGSRNMHDQHRDMRMDIDNMSYEELLALGERIGHVNTGLSEDLLSKCVTETIYCSSDQSQDEGNCVICLEEYKDMDDVGTLKSCGHDYHVSCIKKWLSMKKLCPICKASALPEDTNDK* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2714 546 MobiDBLite consensus disorder prediction 135 160 - -
Dod01g2714 546 ProSiteProfiles Zinc finger RING-type profile. 493 535 IPR001841 -
Dod01g2714 546 MobiDBLite consensus disorder prediction 373 397 - -
Dod01g2714 546 MobiDBLite consensus disorder prediction 69 94 - -
Dod01g2714 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 539 IPR013083 -
Dod01g2714 546 SMART ring_2 493 534 IPR001841 -
Dod01g2714 546 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 542 - -
Dod01g2714 546 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 542 IPR045191 GO:0061630
Dod01g2714 546 CDD RING-H2_TTC3 492 535 - -
Dod01g2714 546 Pfam Ring finger domain 492 535 IPR001841 -
Dod01g2714 546 SUPERFAMILY RING/U-box 484 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2714 Dod-Chr1 66576853 66584323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2714 1 541 C3H Transcription Factor Family AT2G37150 42.210 9.00e-112 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2714 - - gmx:100803627 920.613