LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod01g2707	ATGTCGAACGACTCGTCGTTTTTGTTCTCCGGCATTCGTTTCGACCGAAAGAGATTCGGCAACGACATTGCCAGGTTCGAAAAGAAAAAACCCGGCGTTGATGATGAAGATGCTTCCGTGAAGTTTTCGGGCTCCGTTGAAGTCGAAACCGAGAAACCAAAGGAAGAACGAGTCCACGAGAAAGTTCCACCCTCTGCGAAGAAGAGGAAACGCAAGGGAACATCTTCTTCTGAAGCGGTTGAAGGATTCAGTGTGTTTAGAAATTCGGCTTCCACGGCGGCGGCGGCGGCGCAGTCACTGAATAATCAATCGAATGATGAAGTTGGAGCTGATGACGAGTCCATCCAGCTCAAGAAGGAACATAATAGGCAACTTGAGCGAGATGCTGTATTCCGGAAGAAGCATGACATCCATGTGTCTGGGTATAATGTGCCGTCCCCGCTTCAAGGTTTTGATGAGTTGAAAACTAGGTACAAATGTCCGTCTTATTTATTGCGCAACGTGGCAGAACTCGGATTCAAAGAACCAACTCCAATCCAAAGGCAGGCTATTCCTGTACTTTTACATGATCGTGAATGCTTTGCTTGTGCACCAACTGGCTCCGGCAAAACCTTCGCATTTGTGTGTCCTATGCTTATGAAGCTCAGGGGCCCAGATAAAGGTGCCGTTCGAGCTGTCATCCTTTGTCATACCCGTGAATTATCTGCTCAAACTTACCGAGAATGTAAAAAGCTTGCTAAAGGAAAAAAATTCCGTATCAAGTTAATGACTAAACATCTTTCAAGAAATGCAGATTTTTCGAAATTTCCATGTGATATACTTATATCAACACCACTTCGATTACGCTTGACGATCCGGAGGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTGGATGAATCTGATAAGCTGTTTGAGCCTGAATTATTCAAGCAGATTGATTCTATTATCAAAGCATGCTCAAACCCCTCAATTATACGCTCACTGTTCAGTGCCACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGAAAGAATATGGCTTCTGAAACAATTAAGCAAAAATTGATTTTTACTGGAAGTGAAGAGGGAAAACTTCTGGCAATTCGTCAAAGCTTTGCAGTGAGCCTAAATCCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGAGAACTTGCATTTGACAATATTAGAGTTGACGTCATCCACTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGTGTGCATTGTGTGATCAACTATGATTTCCCAGATTCTGCTGCAGCATATGTCCACAGGATTGGTCGTTCTGGCAGAGCAGGGAGGGCAGGAGAAGCAATTACATTATACACAGAGGAAGACATCCCATTCCTTCGGAATGTAGCTAACTTGATGGCGGCAGTCAGGTTGTGA	1551	0.4423	MSNDSSFLFSGIRFDRKRFGNDIARFEKKKPGVDDEDASVKFSGSVEVETEKPKEERVHEKVPPSAKKRKRKGTSSSEAVEGFSVFRNSASTAAAAAQSLNNQSNDEVGADDESIQLKKEHNRQLERDAVFRKKHDIHVSGYNVPSPLQGFDELKTRYKCPSYLLRNVAELGFKEPTPIQRQAIPVLLHDRECFACAPTGSGKTFAFVCPMLMKLRGPDKGAVRAVILCHTRELSAQTYRECKKLAKGKKFRIKLMTKHLSRNADFSKFPCDILISTPLRLRLTIRRKKVDLSRVEYLVLDESDKLFEPELFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAVSLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVHCVINYDFPDSAAAYVHRIGRSGRAGRAGEAITLYTEEDIPFLRNVANLMAAVRL*	517

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod01g2707	516	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	184	354	IPR014001	-
	Dod01g2707	516	SMART	ultradead3	172	369	IPR014001	-
	Dod01g2707	516	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 57	6	513	-	-
	Dod01g2707	516	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	223	505	IPR027417	-
	Dod01g2707	516	CDD	SF2_C_DEAD	366	496	-	-
	Dod01g2707	516	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	153	181	IPR014014	GO:0003724
	Dod01g2707	516	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	6	513	-	-
	Dod01g2707	516	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	365	516	IPR001650	-
	Dod01g2707	516	MobiDBLite	consensus disorder prediction	28	78	-	-
	Dod01g2707	516	Gene3D	-	127	361	IPR027417	-
	Dod01g2707	516	SMART	helicmild6	406	487	IPR001650	-
	Dod01g2707	516	Pfam	DEAD/DEAH box helicase	177	341	IPR011545	GO:0003676\|GO:0005524
	Dod01g2707	516	Pfam	Helicase conserved C-terminal domain	391	487	IPR001650	-
	Dod01g2707	516	MobiDBLite	consensus disorder prediction	28	63	-	-
	Dod01g2707	516	CDD	DEADc_DDX52	164	357	IPR044764	GO:0003724\|GO:0005524\|GO:0030490
	Dod01g2707	516	Gene3D	-	362	514	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod01g2707	Dod-Chr1	66493308	66498151	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod01g2707	147	507	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.854	3.61e-51	178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod01g2707	K14779		-	gmx:100800969	801.971