Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2690 ATGGCGGCGGCAGCAGCAGCAGCAGCTCGTCCCCTCGTCACCGTCCAAACCCTTGAAGGCGACATGGCCACCGACGCCGCCCCAACCGTCCCCCTCCCCGACGTCATGAAATCCTCCATCCGCCCCGACATCGTCACCTTCGTCCACGACAACATCTCCAAGAACAAGCGCCAGCCCTACGCCGTCAGCCGCCGCGCAGGCCACCAGACCTCCGCTGAGTCCTGGGGAACCGGCCGCGCTGTCTCCCGTATCCCCCGCGTCCCTGGCGGTGGAACACACCGCGCCGGCCAGGGAGCCTTCGGAAACATGTGCCGCGGCGGCCGCATGTTCGCCCCTACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTGAACCAGAAGCGCTTCGCCGTCGTCTCCGCCATCGCCGCCTCCGCGATCCCCTCTCTCGTGCTCGCACGCGGCCACAGGATCGAAACCGTCCCCGAGTTCCCCCTCGTCGTGAGCGACACCGTCGAAGGCGTCGAGAAGTCAAAGGAGGCAGTTAAGGTTCTGAAGCAGATCGGCGCTTTCCCCGACGCGGAGAAGGCGAAGGACAGCCACGGGATCCGCCCTGGGAAGGGGAAGATGAGGAACCGCCGCTACATTTCACGAAAGGGACCCCTCATTGTGTACGGAACCGAAGGCGCGAAAGCCGTTAAGGCCTTCAGGAACATTCCTGGTGTTGAGGTTGCCAATGTTGAGAGGCTCAACCTTCTGAAGCTTGCTCCTGGTGGACACCTTGGGAGGTTCGTGATTTGGACGAAATCTGCTTTCGAGAAGCTTGATTCGATCTATGGAACTTTCGATAAGGTTTCGGAGAAGAAGAAGGGTTATGTTCTTCCTAGATCGAAGATGGTGAATGCTGATTTGGCTAGGATTATTAACTCTGATGAGGTTCAGTCTGTGGTGAGGCCTATTAAGAAGGAGGTTAAGAGGGCTAAGCTGAAGAAGAACCCGCTGAAGAATCTGAATGTGATGTTGAAGCTTAACCCTTATGCCAAGACTGCTAGGAGGATGGCACTTCTTGCTGAGGAGCAGCGTGTTAAGGCTAAGAAGGAGAAGCTCGACAAGAAGCGCAGCACTGTCTCTAAGGAGGAGGCTTCTGCCATCAAGGCTGCAGGAAAAGCTTGGTATCAAACCATGGTGTCTGACTCAGATTATACTGAATTTGATAACTTCTCCAAGTGGTTGGGTGTTTCGCAGTAA 1230 0.5699 MAAAAAAAARPLVTVQTLEGDMATDAAPTVPLPDVMKSSIRPDIVTFVHDNISKNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRFAVVSAIAASAIPSLVLARGHRIETVPEFPLVVSDTVEGVEKSKEAVKVLKQIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGTFDKVSEKKKGYVLPRSKMVNADLARIINSDEVQSVVRPIKKEVKRAKLKKNPLKNLNVMLKLNPYAKTARRMALLAEEQRVKAKKEKLDKKRSTVSKEEASAIKAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2690 409 MobiDBLite consensus disorder prediction 59 77 - -
Dod01g2690 409 MobiDBLite consensus disorder prediction 59 100 - -
Dod01g2690 409 PANTHER BNAC03G35890D PROTEIN 4 409 - -
Dod01g2690 409 Pfam Ribosomal protein L4/L1 family 30 270 IPR002136 GO:0003735|GO:0005840|GO:0006412
Dod01g2690 409 SUPERFAMILY Ribosomal protein L4 14 271 IPR023574 GO:0003735|GO:0005840|GO:0006412
Dod01g2690 409 ProSitePatterns Ribosomal protein L1e signature. 124 150 IPR013000 -
Dod01g2690 409 PANTHER 60S RIBOSOMAL PROTEIN L4 4 409 IPR045240 -
Dod01g2690 409 Pfam 60S ribosomal protein L4 C-terminal domain 284 356 IPR025755 -
Dod01g2690 409 Gene3D - 7 312 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2690 Dod-Chr1 66353835 66355763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2690 5 409 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.222 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2690 K02930 - gmx:100779764 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2690 01 66353835 66355763 Dod07g0841 07 12226105 12228687 PCT