Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2686 ATGCCGCCTAAGCAGCAATCGAAGGCTGATATAGCGAAGAAGCAGAAGATCGTAGAGGACAAAACCTTCGGTCTCAAGAACAAGAACAAGAGCAAGAATGTCCAGAAATACGTCCAGAACCTCAAACAAGCCGTACAGCCCAAGCCCGACGCTTCCAAAGTCGCTGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAGCTGAATGAATTGTTCAAAATAGCTGTTACTCAGCCTAAAGTGCCAGTTGGTGTTGATCCTAAGTCCGTGTTGTGTGAGTTTTTCAAAGTGGGGCAGTGTGCCAAGGGCTTCAAATGCAAGTTCTCGCATGACTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTATAGCGACAAGCGTGACGAGGAAACGATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTAGTGGAGTCAAAGAAAACAGAATATAATCAGAACAAACCAACTGACATAGTATGTAAATACTTTTTGGATGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTTTGCCCCAATGGTGGGAAGAATTGCCATTATAGACATGCCCTTCCCCCTGGATATGTTTTGAAGTCTCAAATGAAGGCTCTATTAGAGGAAGAAAGTGAAAAAATAACAATTGAGGAGGAGATAGAAAATGAGCGTGCCAAAACGAAATCTACAACTCCTATGACCCCAGAGTTATTCATGCAATGGAAGAAGAAGAAAATAGAAGAGAGAGATGCCAATTTGGCTGCACAACAGGCAGAGAGGGCTAAAAATGACCGCATGAGTGGTCGTGAGCTATTTTTGTCAGATGCTAGCTTGTTTGTGGATGATGCTGAAGCATATGACAAGTACCAAAGAGAACCAGAATCTTATGCCACTGAACAGAAGGCCAATGGGAATGCTGCTGAAGATGGTCCCAGCACGTCTACAGCTGATGCTGAAGATCTTGATGATGTTGATGATGAGGATGACGATGAACTGGACATGGATGAGCTGAATGAATTGGAAGCAAGCTTATCAAGGACATCAATCCAAATAAAGGAGCAAGGAGCTGAAGCCTAA 1083 0.4386 MPPKQQSKADIAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQAVQPKPDASKVAAKKKKEEEKAKDKELNELFKIAVTQPKVPVGVDPKSVLCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDIYSDKRDEETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKITIEEEIENERAKTKSTTPMTPELFMQWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSDASLFVDDAEAYDKYQREPESYATEQKANGNAAEDGPSTSTADAEDLDDVDDEDDDELDMDELNELEASLSRTSIQIKEQGAEA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2686 360 Coils Coil 246 266 - -
Dod01g2686 360 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Dod01g2686 360 Coils Coil 339 359 - -
Dod01g2686 360 MobiDBLite consensus disorder prediction 292 337 - -
Dod01g2686 360 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Dod01g2686 360 MobiDBLite consensus disorder prediction 317 337 - -
Dod01g2686 360 Gene3D - 87 203 - -
Dod01g2686 360 MobiDBLite consensus disorder prediction 298 314 - -
Dod01g2686 360 Gene3D - 204 279 - -
Dod01g2686 360 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Dod01g2686 360 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Dod01g2686 360 Coils Coil 208 228 - -
Dod01g2686 360 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Dod01g2686 360 Coils Coil 51 71 - -
Dod01g2686 360 MobiDBLite consensus disorder prediction 42 63 - -
Dod01g2686 360 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 359 - -
Dod01g2686 360 Pfam DRG Family Regulatory Proteins, Tma46 215 294 IPR032378 -
Dod01g2686 360 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 359 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dod01g2686 DFRP_C 9.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2686 - - gmx:100806617 596.66