Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2651 ATGAAGAGACAGATGAGCAATGAAGGGACAGAGAGCATTGGCTCAGCAAATTGTCTAATGCTGCTTCCTCTTCCCCAAGAAAGCAACAAGTCATCATTAATTAGGAGAAGTCTTGGAACTGTTGAATTTGAGTGCAAGACATGCAACCGCAAGTTCTCATCGTTTCAAGCACTCGGTGGCCACAGGGCTAGCCACAAGAGGCAGAAGCTGGATGATGGGGAAGAAGAGCTCAAACAAGAGGGCAAATCACTGAGCCTCTGGAACAAGCCCAAAATGCACGGGTGCTCTATTTGTGGCCTTGAATTCTCTCTGGGCCAGGCACTGGGGGGCCACATGAGAAAGCATAGAGGAGCTGTCATCAATGAAGAAGGGTTCTCTTCTTCCATCGACCATGTTATTGCAAAAACCCCGGTTCTGAAAAGATCGAATAGTACGAGGATTACGTGCTTGGACTTGGACTTGAACTTGTCGCTGGCACCCCCATCAGTTCCTCTTTCGTTGTTCTGA 507 0.4813 MKRQMSNEGTESIGSANCLMLLPLPQESNKSSLIRRSLGTVEFECKTCNRKFSSFQALGGHRASHKRQKLDDGEEELKQEGKSLSLWNKPKMHGCSICGLEFSLGQALGGHMRKHRGAVINEEGFSSSIDHVIAKTPVLKRSNSTRITCLDLDLNLSLAPPSVPLSLF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2651 168 PANTHER ZINC FINGER PROTEIN ZAT5 1 156 - -
Dod01g2651 168 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 156 - -
Dod01g2651 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Dod01g2651 168 SUPERFAMILY beta-beta-alpha zinc fingers 43 115 IPR036236 -
Dod01g2651 168 Gene3D Classic Zinc Finger 40 115 - -
Dod01g2651 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Dod01g2651 168 SMART c2h2final6 93 115 IPR013087 -
Dod01g2651 168 SMART c2h2final6 43 65 IPR013087 -
Dod01g2651 168 Pfam C2H2-type zinc finger 43 68 - -
Dod01g2651 168 Pfam C2H2-type zinc finger 93 117 - -
Dod01g2651 168 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Dod01g2651 168 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2651 Dod-Chr1 65944836 65946399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2651 1 157 C2H2 Transcription Factor Family AT2G37430 42.515 3.11e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2651 zf-C2H2_6 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2651 - - aip:107648719 219.164