Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2650 ATGAAGAGACAAATAGTGAACCAAGGAGCACAGGGCTTGTTAGACATAGCTGATTATTTGATGATGCTCTCTCAAGCACAAGATATCAATCATCATCATCCCCATAATAAAAGCCTATCCGATGAAGAGGTATTCAGGTGCAAGACCTGCAACCGCGAGTTCACTTCATTTCAAGCGCTGGGTGGCCACAGGGCTAGCCACCACAAGAGGCCAAAACTAGATCATGATGATGATGGTGAAAAGCTCAAAGCACATGCCAAATATCTGGGCTTGGGGATATTGGAGAAGGCGAATAAGCCCAAGATGCACGAGTGCTCAATTTGCGGCCAGAGATTCTCTCTGGGTCAGGCACTGGGAGGCCACATGAGAAAACACAGAGATGCCATCAACGAAGGACTTGCTTCTCCCATGGAACAGGTTGTGGTTGCAAATGTTCCTGTCCTAAAGAGATCGAGTAGTACGAGGGTGATGTGTTTGGACCTCAACTTAACGCCTCTAGAGAATGATTTGAAGTTATTGTTCGGGACAATGGCACCCAAAGTTGATATTTAA 552 0.4601 MKRQIVNQGAQGLLDIADYLMMLSQAQDINHHHPHNKSLSDEEVFRCKTCNREFTSFQALGGHRASHHKRPKLDHDDDGEKLKAHAKYLGLGILEKANKPKMHECSICGQRFSLGQALGGHMRKHRDAINEGLASPMEQVVVANVPVLKRSSSTRVMCLDLNLTPLENDLKLLFGTMAPKVDI* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2650 183 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Dod01g2650 183 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 182 - -
Dod01g2650 183 ProSitePatterns Zinc finger C2H2 type domain signature. 47 68 IPR013087 -
Dod01g2650 183 Gene3D Classic Zinc Finger 81 144 - -
Dod01g2650 183 PANTHER ZINC FINGER PROTEIN ZAT5 1 182 - -
Dod01g2650 183 SUPERFAMILY beta-beta-alpha zinc fingers 44 125 IPR036236 -
Dod01g2650 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Dod01g2650 183 Gene3D Classic Zinc Finger 40 65 - -
Dod01g2650 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 125 IPR013087 -
Dod01g2650 183 Pfam C2H2-type zinc finger 103 127 - -
Dod01g2650 183 Pfam C2H2-type zinc finger 44 69 - -
Dod01g2650 183 SMART c2h2final6 103 125 IPR013087 -
Dod01g2650 183 SMART c2h2final6 45 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2650 Dod-Chr1 65936482 65938016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2650 14 183 C2H2 Transcription Factor Family AT2G37430 47.159 9.31e-41 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2650 zf-C2H2_6 9.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2650 - - aprc:113870747 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0387 06 5077295 5078347 Dod01g2650 01 65936482 65938016 ECH
Dod01g2650 01 65936482 65938016 Dod01g2650 01 65936482 65938016 ECH
Dod01g2650 01 65936482 65938016 Dod07g0794 07 11302670 11305259 PCT