Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2649 ATGAAGAGACAGTTTGATCAAGTACAAGGGTTCGAGAGCATAGATTTGGCAAATTGTTTGATGCTGCTCTCTCGTCCCCAGATAATTAGCGACAAGTCACTGATGCAGAAAAGTTTAGGCCCCGTGGAATTCGAGTGCAAGACATGCAACCGCAAGTTCCCATCTTTTCAAGCACTCGGTGGCCACAGAACAAGCCACAAGAGGCCAAAACTTGAGGGTGAGGAAGAGCTGAAAGCGCAAGCTAAATCTCTTAGCTTGGGGAACAAGCCCAAAGTGCACGAGTGCTCCATTTGCGGGCAGGAATTCGCTCTTGGGCAGGCACTTGGAGGCCACATGAGAAGGCACAAGGCAGCCTTCAACGAAGAGCTGTCTTCTATGAAACAGCATGTTGTTGCAAAAGTGCCAGCAGTTCTGAAGAGATCAAATAGCTTGAGGGCTAGGTGCTTGGACTTGAACTTAACTCCGCTCGAGAATGATTTGAAGTTGTTGTTTGGAAACATGGCTCCGAAAGTTGATGCCTTTGTCTGA 528 0.4792 MKRQFDQVQGFESIDLANCLMLLSRPQIISDKSLMQKSLGPVEFECKTCNRKFPSFQALGGHRTSHKRPKLEGEEELKAQAKSLSLGNKPKVHECSICGQEFALGQALGGHMRRHKAAFNEELSSMKQHVVAKVPAVLKRSNSLRARCLDLNLTPLENDLKLLFGNMAPKVDAFV* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2649 175 Pfam C2H2-type zinc finger 92 117 - -
Dod01g2649 175 Pfam C2H2-type zinc finger 44 69 - -
Dod01g2649 175 Gene3D Classic Zinc Finger 42 115 - -
Dod01g2649 175 SUPERFAMILY beta-beta-alpha zinc fingers 44 115 IPR036236 -
Dod01g2649 175 PANTHER ZINC FINGER PROTEIN ZAT5 1 170 - -
Dod01g2649 175 SMART c2h2final6 93 115 IPR013087 -
Dod01g2649 175 SMART c2h2final6 44 66 IPR013087 -
Dod01g2649 175 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 170 - -
Dod01g2649 175 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Dod01g2649 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Dod01g2649 175 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Dod01g2649 175 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2649 Dod-Chr1 65932304 65933167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2649 1 172 C2H2 Transcription Factor Family AT2G37430 45.455 1.16e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2649 zf-C2H2_6 1.7e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2649 - - gmx:100527151 239.965