Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2638 ATGGCGTTCTTCTTCTCTGGAGCTCAGCGCCTGCTTCGTCAGTCCTCCTCAGTTCTCGCCTCCCACTTCACTTCCACTCGTCTCTCCTCAACTCTCACTTCCCCCAAACTCTTCGTCAGTGGTCTTTCAAGGCTGACAACTGATGAAAAACTTACAGAAGCATTTTCTTCCTTTGGGCAGCTCATTGAAGCTAAGGTGATAACCGATAGAGCCTCTGGACGATCGAAGGGGTATGCTTTTGTAACTTATGCAACTATTGAAGAAGCTGAAAAGGCGAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTCATATTTGTTGATCCTGCTAAACCAAGAGAGCCCAGACCACCTCAGCAGCGACAGTCTCAGCCATCTGAAGCTGGTTTCACGGTTAACAAGACAATTGGTTGGTGTGGTTGA 426 0.4718 MAFFFSGAQRLLRQSSSVLASHFTSTRLSSTLTSPKLFVSGLSRLTTDEKLTEAFSSFGQLIEAKVITDRASGRSKGYAFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQRQSQPSEAGFTVNKTIGWCG* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2638 141 PANTHER NUCLEOLAR PROTEIN 8 1 141 - -
Dod01g2638 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Dod01g2638 141 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 141 - -
Dod01g2638 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Dod01g2638 141 Gene3D - 21 134 IPR012677 -
Dod01g2638 141 SUPERFAMILY RNA-binding domain, RBD 34 129 IPR035979 GO:0003676
Dod01g2638 141 SMART rrm1_1 36 109 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2638 Dod-Chr1 65789346 65791888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2638 37 128 Eukaryotic Initiation Factors Gene Family AT3G16380 35.789 6.07e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2638 - - gmx:100306326 202.986