Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2617 ATGAATCATCACTGTGTTCCAGATTTCGAAATCCAAATGGATGACGAAGACTGCCCTATACCCATGCCCTCTCCCATCCCTCGCCAAAAGAAACCCTCCGTCGAAGACGAGGAGATCATGGAGCTGCTATGGCAAAACGGCCAAGTCGTGATGCAGAGTCAGAACCAACGTCATCCTCTCCGGAAACCGCTGCCGCCGCCGAGAACCTCCGGCGACGAGATCCCGGCCGGTCCCTCTACGGCGAGGGAGGTTCCGCCGGAAGTAGAGAGCTACAACCAGCATCTATTCATGCAAGAGGACGAGATGACTTCGTGGCTTCACTATCCAATTGACGATCCTCCTTTGGATCAAAGCTTCTGCGCCGATTTCCTCTTCAACGCAAACCAAATCTGCAGCAGCAGCAACAACAACAGCAGCAGCAACGGTAACAGTGCCATGCAAACTCCTGCTCATCCTTCTCAGATGACGGAGCTCCGGCAGCCGCCGAGGATGGTGGCTCCTCGGCCTCCGATTCCGCCAGTGAGGAGGTCGGAGCCGGCAAAGACGCCGAACTTCGCGTGCTTCGCGAAGCACAATGCGAGAGCGGAGGCGGCGCTGGGGCCGTCGTCGAGTTCGCAGGCGGTGGCGAGGGAATCGACGGTGGTGGAGTCGTGTGACACGCCTGTTGCGGCGGCAGCGGCGACTTCGGCGGAGCACACGGAAGGAGACGCCGGCCGCTGGAGCGTGAGCGGCGCAGGTGCGGCGGTGTCTGCCGGCGGAGGGAGGGCTACAACGACGTGCGATGTGACGATGACGTCATCACCGGGCGGTTCGAGTAGCAGCGGGGAACCGGTTCAGAGGACGGCGGCGGAGGATCGGAAGCGGAAGGGAAGGGAAGCGGAGGAATGGGAGAGTCAGAGCGAGGATGTTGATTTTGAATCGGCAGAAGCAAAAAGGCAAGCTCGTGGGTCAACATCTACGAAGAGATCCCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGTTGTAATAAGTCTGACAAGGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGGCAATGGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCCATCATGCCATTTCCTAATATGTTAGCAGGTTCAGCTTTGCCAGCAGCTGCGGCTGCTCATTTGGGACCGAGGTTCCCAGTGCCTTCTTTCCATATGCCGCATGTTCCTGCACCTGATGCATCTCGAATGCAAGCCGTAAATCAGTTAGATAATATGCTGACTTCAATTGGTGCATCTGATCCAAATCAGTCACGTATCCCAAACTTCACTGATCCTTATCAACAATACCCTGGTCCCCACCAGATGCAATTTCAATTAATGCAGAATCAGGCAATGAACCAACCAAATGTTAACAAGCCAAGTACCAGTACGGGCCCTGAGAATCCCGAAAATCATCGGCCAGGAGAAAAATGA 1608 0.5429 MNHHCVPDFEIQMDDEDCPIPMPSPIPRQKKPSVEDEEIMELLWQNGQVVMQSQNQRHPLRKPLPPPRTSGDEIPAGPSTAREVPPEVESYNQHLFMQEDEMTSWLHYPIDDPPLDQSFCADFLFNANQICSSSNNNSSSNGNSAMQTPAHPSQMTELRQPPRMVAPRPPIPPVRRSEPAKTPNFACFAKHNARAEAALGPSSSSQAVARESTVVESCDTPVAAAAATSAEHTEGDAGRWSVSGAGAAVSAGGGRATTTCDVTMTSSPGGSSSSGEPVQRTAAEDRKRKGREAEEWESQSEDVDFESAEAKRQARGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGIGMGMGMEMGMNRPIMPFPNMLAGSALPAAAAAHLGPRFPVPSFHMPHVPAPDASRMQAVNQLDNMLTSIGASDPNQSRIPNFTDPYQQYPGPHQMQFQLMQNQAMNQPNVNKPSTSTGPENPENHRPGEK* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2617 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 322 390 IPR036638 GO:0046983
Dod01g2617 535 MobiDBLite consensus disorder prediction 256 279 - -
Dod01g2617 535 Pfam Helix-loop-helix DNA-binding domain 328 374 IPR011598 GO:0046983
Dod01g2617 535 CDD bHLH_AtPIF_like 324 387 - -
Dod01g2617 535 MobiDBLite consensus disorder prediction 225 332 - -
Dod01g2617 535 MobiDBLite consensus disorder prediction 53 85 - -
Dod01g2617 535 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 532 - -
Dod01g2617 535 SMART finulus 330 379 IPR011598 GO:0046983
Dod01g2617 535 MobiDBLite consensus disorder prediction 472 527 - -
Dod01g2617 535 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 532 IPR031066 -
Dod01g2617 535 MobiDBLite consensus disorder prediction 163 177 - -
Dod01g2617 535 MobiDBLite consensus disorder prediction 472 535 - -
Dod01g2617 535 Gene3D - 319 382 IPR036638 GO:0046983
Dod01g2617 535 MobiDBLite consensus disorder prediction 134 155 - -
Dod01g2617 535 MobiDBLite consensus disorder prediction 134 180 - -
Dod01g2617 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 324 373 IPR011598 GO:0046983
Dod01g2617 535 MobiDBLite consensus disorder prediction 14 33 - -
Dod01g2617 535 MobiDBLite consensus disorder prediction 280 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2617 Dod-Chr1 65447534 65454076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2617 3 379 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 44.072 2.02e-75 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g2617 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2617 - - gmx:100797225 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2617 01 65447534 65454076 Dod07g0768 07 10888151 10899397 PCT