Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2579 ATGGTGGTTCAGGTGGTTGGATGGCCTCCTCTTGGAACTTACAGAATGAATAGCTTTAATAGCCATGCGAAATCACAAGCCAACGAAGTATTCAATTCTGTGGTTCAGAAAAGTAAGAGCAATGGTGCTGTGGCAAGGAAGAGTGCAGGCGGTGGCAGCGATAATAACCACCTTACTTTGAAGGAAAAAGGAAACCTCAGGAATTCACTGTTTGTGAAAGTGAATATGGATGGGGTGCCAATTGGAAGGAAAGTTGATTTGAGTGCTTATACTTCATATGAAAACTTAGCTCAAGCTTTGGAGGATATGTTTAATGAACCAACTACAGTCATCACTCGTAAAGTAGGATCAAATGGAGAGGGTCATGGCATTGTATTTGTAGCAGATGGACAATCAAAATCATTGGATGGATCTTCCAATTTTGTGCTCACTTACAAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTGCCTTGGTGCACCAAGATTGGAAGAAAAGAACAGCAGACTGAAAAACAAGCTCACATAGTTATGGTTTGCAACTTCGCGTGGCTTAGGATAGAGAAAACATACGACCAAAAATGTATTACATGA 597 0.4121 MVVQVVGWPPLGTYRMNSFNSHAKSQANEVFNSVVQKSKSNGAVARKSAGGGSDNNHLTLKEKGNLRNSLFVKVNMDGVPIGRKVDLSAYTSYENLAQALEDMFNEPTTVITRKVGSNGEGHGIVFVADGQSKSLDGSSNFVLTYKDKEGDWMLVGDVPWCTKIGRKEQQTEKQAHIVMVCNFAWLRIEKTYDQKCIT* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2579 198 Pfam AUX/IAA family 3 160 IPR033389 -
Dod01g2579 198 Gene3D - 64 180 - -
Dod01g2579 198 ProSiteProfiles PB1 domain profile. 69 180 IPR000270 GO:0005515
Dod01g2579 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 161 IPR003311 GO:0005634|GO:0006355
Dod01g2579 198 SUPERFAMILY CAD & PB1 domains 65 165 - -
Dod01g2579 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 4 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2579 Dod-Chr1 65011312 65015905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2579 72 160 B3 DNA Binding Superfamily AT3G61830 32.584 4.62e-08 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod01g2579 AUX_IAA 4.1e-44 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2579 01 65011312 65015905 Dod07g0726 07 10153984 10158298 PCT