Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2570 ATGGAAGCACGCCCTGGTTATTCCATTGAAAGATCAAGTGCAAAGCAACTCAATAACATGGGGATGTCTGGAGCGCTTCCTTCATCATTGCCTATGCTTCCAACTCCTCTAGAAGAGACATACCCCAAATTATCTGATTCACAGCCGGTTCTTGTGGAAAACGAGCATATTACAGGACCATTCACCCATCCAAGTCATTTGAGTTCCAGCGGAGCAGTTGGGCATATGTTTTCTTCTTCGCCTGGATATTCAACTAATCTCCATCACTCTTCCCTTTCACCTCATGGAAAACACTCTAGAAGCACTCATTTTATTTCACAGACATTGAGTAACATGACTTCAATGCCATTATCTTATTCATCAAATAATGAACCAGTACCTCCTACTACATCAACCCATTATTCCAAAGGAAACAGTGCTTCCTGGCATACAGATTCCCTGCATAGCTTTCTTGATTTGCCTTCAAATAACTCCATTGATAGTAGTCAAGTAGACAGCAGTGCTTGCAATATTATGGCGCCTGAGGAGTATACTAAGCAAAACAATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGATACTTTGACTTCTAACTGGAATGATATTCTTGTTGACAACATTCAAGATCTTGAACCAAAGGTGGTGTGCCAGGTTTCAAAACCATCTTCACAATTTCCGGAAGGACACCAATCCCAAGGCCATCAACAACTTCCTGCTTTGTCTGGAGAAAATCATGTTGGGGCTGCCCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGTTGGACACCTGAGCTTCATGAGGCCTTTGTGGAGGCTGTCAACCACCTTGGTGGGAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTAAGTCCCATTGAAGAGATTTCATCTCTAGATTTGAAAGCTGGTATTGAGATCACTGAAGCCCTGCGGCTACAAATGGAGGTTCAGAAGCGCTTGCACGAACAGCTTGAGATTCAAAGGAATCTTCAGCTGCGAATAGAAGAGCAAGGGAGGTATCTCCAGATGATGTTTGAGAAGCAATGCAAGTCTGGCATTGAAACATTCAAGGCATCATCATCTGCCATTGAGAGTATATCTGGAGCATCTTCTGATGCCATGAAAGATTCTCCTACCAAAAGGGAATTGGAAGCCTCCCAAGTGGACCTTTGCAGTTCAGGACCTGATCACGCTAATAATGGCGATAATACCACTGTCGAGGAAAATTCGCTGGAAATGGGTGGGAAGCGGGATACTCCTGAAGGGCAAGCTTCTGAGGATCCTAAGCAACACGCTAATGAAGATAGTGCTCAATTCGCAAAGCGTCCGCGGACAGATGAGTGA 1473 0.4433 MEARPGYSIERSSAKQLNNMGMSGALPSSLPMLPTPLEETYPKLSDSQPVLVENEHITGPFTHPSHLSSSGAVGHMFSSSPGYSTNLHHSSLSPHGKHSRSTHFISQTLSNMTSMPLSYSSNNEPVPPTTSTHYSKGNSASWHTDSLHSFLDLPSNNSIDSSQVDSSACNIMAPEEYTKQNNWQEWADQLISDDDTLTSNWNDILVDNIQDLEPKVVCQVSKPSSQFPEGHQSQGHQQLPALSGENHVGAAPSSSANSAPAKPRMRWTPELHEAFVEAVNHLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEISSLDLKAGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSSAIESISGASSDAMKDSPTKRELEASQVDLCSSGPDHANNGDNTTVEENSLEMGGKRDTPEGQASEDPKQHANEDSAQFAKRPRTDE* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2570 490 MobiDBLite consensus disorder prediction 19 42 - -
Dod01g2570 490 MobiDBLite consensus disorder prediction 115 138 - -
Dod01g2570 490 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Dod01g2570 490 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Dod01g2570 490 Gene3D - 261 320 - -
Dod01g2570 490 MobiDBLite consensus disorder prediction 454 490 - -
Dod01g2570 490 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Dod01g2570 490 Coils Coil 350 370 - -
Dod01g2570 490 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
Dod01g2570 490 MobiDBLite consensus disorder prediction 243 262 - -
Dod01g2570 490 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Dod01g2570 490 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 25 479 - -
Dod01g2570 490 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 479 IPR044848 GO:0003700
Dod01g2570 490 MobiDBLite consensus disorder prediction 435 453 - -
Dod01g2570 490 MobiDBLite consensus disorder prediction 83 102 - -
Dod01g2570 490 MobiDBLite consensus disorder prediction 409 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2570 Dod-Chr1 64900213 64906848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2570 1 404 G2-like Transcription Factor Family AT4G28610 48.184 3.96e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod01g2570 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2570 - - gmx:100810560 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2570 01 64900213 64906848 Dod06g1635 06 22161917 22166312 PCT