Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2559 ATGGGGAGGAGTAGTAGGAGGAAGAGTTTGAAGAACATAATGAATTGCCTTTGCACAGGGGAGCAGCTGAGAGGAAGAGAAGGAGGAGCAGATGAGATGATGGTTCCTACTTCGTCGGAATCTCTTGCCACCAAGGATTACTATTCGGCTACCGGGAGTGGGTATTCTGGCCAAGATGGAGGACAAATTGAGAGGAAGCCGGATACAGGCAGCATTGAGGAAGCCGAGTCGTCTTTGCGGGAGAGTGGCTGCTTGAATTATGAGGAAGCTAGAGCTCTGTTAGGTAGATATGAATATCAGAAAGGCAATATAGAAGCTGCTTTACATGTTTTTGAGGGAATAAATGTAGGCACTGTGACTCCCGAGATAAAAATTTCCCTTGCCAAAAGCAGAGAATGCAGAGAACGCCGTAAGAGACATTCCCAGAATTATGCTCCACCTCCAATGTCTGTAAATGCTATTGGCTTACTGTTTGAAGCAGTTTTCCTTAAAGCAAAATGTTTGCAGGCTCTTGGAAGGTTTAAAGAAGGTGCCCAATCTTGCAAAGTTATTCTGGACATAGTTGAGTCTTCATTACCTCAAGGCTTGCCTGAAAACTTTGGTGCTGAATGTAAATTGCAGGAGACTTTGAGTAAGGCAGTTGAGCTACTTCCAGAATTATGGAAACTTGCTGATTGTCCACATGAAGTTATTTTGTCATACCGGCAGGCTCTCCTTTATCGATGGAATCTTGATTCAGAGACCACAACAAAGATTCAGAAAGAATTTGTTGTTTTTCTTCTTTATAGTGGAGGAGAAGTAATCCCGCCAAATCTCCGTTCACAAATGGACAGTTCGTTTGTACCCAGAAACAACATAGAAGAGGCTATACTTATTTTAATGATTTTGCTGAGAAAAGTTTCTCTAGGTGAAATTGAGTGGGATCCCTCAATTTTGGACCACCTTTCGTTTGCTCTGTCTATTTCAGGAGATTTGACAGCTTTAGCCAATCAATGGGAAGAATTGCTTCCTGGGACTATAGATCGAAGAGAAAGGTACTACGCCCTTGCTCTTTGTTATTATGGAGCTGGTCAGGACTTGGTAGCACTGAGCCTTCTTAGAAAATTGTTGAGCAGCAGCGAAGACCCAAAACATGTTCCAGCTTTGTTAATGGCTTCTATGATTTGTTGCAAGAACTCCAATCTTGCAAAAGATGGGGTCAGCTTTGCTCGCAGAGCACTTGAGAAGTTAAATGGCAGATGTGACCAGTTGGAAGGTCTTGCCAATTCTTTACTTGGTATTTCACTTTCAGCATACTCAAAATTAGCAATCTCTGATTCTGAGAGGTTTGGAAGACAATCTGAAGCACTTCAGTCTCTGGAAACAGCTGGGAGAATGACCAGAATGAGAGACCCACTAGTATTGTATCATCTCAGTTTAGAATATGCAGAGCAACGGGAGTTAGATGCTGCACTCCATTATGTTGAGTGCTTTCTAGAAGTGGAAGCTAGGTCCAATGTTAAAGGGTGGTTGTTGTTAGCCCGGATATTATCAGCGCGGAAACGGTTTTTGGATGCTGAATCAGTTGTCAATGCTGCTTTGGATCAGACTACAACATGGGATCAAGGAGACTTGTTGCGAACAAAAGCTAAACTTCAAATTGCACAGGGCCAGCTAAGGAGCGCCTTTGAGACATATACTCAGCTTCTTTCTATACTTCATATCCAGAGAAAAACTTTTGGTCCAAGGAAGAAGCTATATAAGGAATCTAGAGATCATTCTAGAAACTTGGAAGTGGAAATATGGCATGATCTTGCTTATGTCTACATAGCTCTGTCGTATTGGCATGATGCCGAGGTGTGTCTTTCAAGATCTAAAGCCATCAAACCATACACTGCTTCTAGATTGCATGCAATAGGTACAATGCACGAAGCAAGGGATCGTTACAAGGAGGCTCTAAAAGCTTTTCGTGATGCTTTGGATATTGATCCTGGACATGTCCCTAGCTTGATCTCCACTGCTCTTGTTCTTAGACGGTGCAGTCATCAATCAAATCCTGCTATTAGAAGCTTTCTGATGGACGCACTTCGGCATGACAGATTGAACGCTTCTGCATGGTATAATCTTGGCATTCTTTACAAGGCTGAGGGGAAAATATTAGAAGCTGCTGAATGTTTCGAGGCAGCAAACTTTCTAGAAGAATCAGCACCAGTTGAACCATTCAGATGA 2208 0.4262 MGRSSRRKSLKNIMNCLCTGEQLRGREGGADEMMVPTSSESLATKDYYSATGSGYSGQDGGQIERKPDTGSIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGINVGTVTPEIKISLAKSRECRERRKRHSQNYAPPPMSVNAIGLLFEAVFLKAKCLQALGRFKEGAQSCKVILDIVESSLPQGLPENFGAECKLQETLSKAVELLPELWKLADCPHEVILSYRQALLYRWNLDSETTTKIQKEFVVFLLYSGGEVIPPNLRSQMDSSFVPRNNIEEAILILMILLRKVSLGEIEWDPSILDHLSFALSISGDLTALANQWEELLPGTIDRRERYYALALCYYGAGQDLVALSLLRKLLSSSEDPKHVPALLMASMICCKNSNLAKDGVSFARRALEKLNGRCDQLEGLANSLLGISLSAYSKLAISDSERFGRQSEALQSLETAGRMTRMRDPLVLYHLSLEYAEQRELDAALHYVECFLEVEARSNVKGWLLLARILSARKRFLDAESVVNAALDQTTTWDQGDLLRTKAKLQIAQGQLRSAFETYTQLLSILHIQRKTFGPRKKLYKESRDHSRNLEVEIWHDLAYVYIALSYWHDAEVCLSRSKAIKPYTASRLHAIGTMHEARDRYKEALKAFRDALDIDPGHVPSLISTALVLRRCSHQSNPAIRSFLMDALRHDRLNASAWYNLGILYKAEGKILEAAECFEAANFLEESAPVEPFR* 736
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2559 735 Gene3D Tetratricopeptide repeat domain 63 436 IPR011990 GO:0005515
Dod01g2559 735 SUPERFAMILY TPR-like 309 721 IPR011990 GO:0005515
Dod01g2559 735 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 735 - -
Dod01g2559 735 Gene3D Tetratricopeptide repeat domain 576 730 IPR011990 GO:0005515
Dod01g2559 735 PANTHER PROTEIN NPG1 7 735 IPR043376 -
Dod01g2559 735 ProSiteProfiles TPR repeat profile. 696 729 IPR019734 GO:0005515
Dod01g2559 735 SMART tpr_5 696 729 IPR019734 GO:0005515
Dod01g2559 735 SMART tpr_5 626 659 IPR019734 GO:0005515
Dod01g2559 735 SMART tpr_5 536 569 IPR019734 GO:0005515
Dod01g2559 735 SMART tpr_5 592 625 IPR019734 GO:0005515
Dod01g2559 735 SMART tpr_5 500 533 IPR019734 GO:0005515
Dod01g2559 735 SMART tpr_5 158 191 IPR019734 GO:0005515
Dod01g2559 735 SMART tpr_5 465 498 IPR019734 GO:0005515
Dod01g2559 735 Coils Coil 400 420 - -
Dod01g2559 735 ProSiteProfiles TPR repeat profile. 626 659 IPR019734 GO:0005515
Dod01g2559 735 MobiDBLite consensus disorder prediction 49 77 - -
Dod01g2559 735 Pfam Tetratricopeptide repeat 628 658 IPR019734 GO:0005515
Dod01g2559 735 Pfam Tetratricopeptide repeat 696 722 IPR019734 GO:0005515
Dod01g2559 735 Pfam Tetratricopeptide repeat 473 529 - -
Dod01g2559 735 Gene3D Tetratricopeptide repeat domain 438 567 IPR011990 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod01g2559 Dod-Chr1 64778871 64793013 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2559 7 735 Calmodulin-binding Proteins AT4G28600 55.930 0.0 759
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2559 K21843 - gmx:100800762 1045.03
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0702 07 9790236 9796435 Dod01g2559 01 64778871 64793013 PCT