Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2546 ATGGATCATGTCATTGCTGGGAAGTTTAAACTGGGGAGGAAAATTGGGAGTGGATCTTTTGGGGAGCTTTATATAGCTGTTAATGTGCAAACTGGAGAGGAGGTGGCTGTCAAGCTGGAATCTGTGAAGACAAAGCATCCACAGCTTCATTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTTAAGTGGTTTGGAGTTGAAGGAGACTACAATGTCATGGCTATTGACCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTTACACTGAAGACAGTGCTAATGCTTGCTGATCAATTACTTAACAGAATTGAATATATGCATTCAAGAGGTTTCCTTCACCGCGACATAAAGCCAGACAATTTTCTAATGGGCCTAGGACGCAAAGCAAACCAGGTGTACATCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTCCAGACTCATAGGCACATACAATACAGGGAAAACAAGAACCTTACAGGCACAGCACGATATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGACCTGGAATCTCTCGGTTATGTGCTCATGTACTTCTTAAGGGGAAGTCTTCCTTGGCAAGGTCTGAAAGCTGGCACCAAAAAACAAAAGTATGATAAAATCAGTGAGAAGAAGATATCAACTTCCATAGAGTTGCTTTGCAAAAATTATCCCTCAGAGTTTGTTTCATATTTCCACTACGGCCGATCGTTGCGGTTTGAGGACAAGCCCGATTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATTAGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCACAAATCAGTGGAAGCTCTAGAGGGCGGCATAGCAGTGGCAAGGCAGCTATGAATGCTGGACCATCCGTTCAAAAGCCAGAAAAGATCTCAGTTGGGAAGGAGATTCGAGAGAGATACCCTGGTGCTGTCGAAGGTTTCTCCCGGAGGAACCCAACTAGTTCTAGTCCTCATCGTGATCACACCAAACATAGGACTCTTGAAGATGTAGCAGTACAAAGGGATGTGTATCATGATCAAGAGAAGGGACGCAATTCCTCTAGATATGGCAGTAGTTCAAGAAAAGCCATAATCTCATCAACCAGGCCAAGTTCCTCAGCTGACCATACTGACAGTCGTACAGGCCGGCTGACCTCAACTGTTAGCCGTCCATCTACTGCACAGAGAGTTCAACCTATCTATGAGACCAAACAACCATCTTTCACACGCACTGGATCTACGAGAGCCAACCGCGAAGATCCTCTGCGGAGCTTTGAGCTCCTCTCTATCAGGAAGTAA 1383 0.4353 MDHVIAGKFKLGRKIGSGSFGELYIAVNVQTGEEVAVKLESVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKFTLKTVLMLADQLLNRIEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIQYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKISTSIELLCKNYPSEFVSYFHYGRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQISGSSRGRHSSGKAAMNAGPSVQKPEKISVGKEIRERYPGAVEGFSRRNPTSSSPHRDHTKHRTLEDVAVQRDVYHDQEKGRNSSRYGSSSRKAIISSTRPSSSADHTDSRTGRLTSTVSRPSTAQRVQPIYETKQPSFTRTGSTRANREDPLRSFELLSIRK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2546 460 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2546 460 MobiDBLite consensus disorder prediction 300 448 - -
Dod01g2546 460 MobiDBLite consensus disorder prediction 381 443 - -
Dod01g2546 460 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Dod01g2546 460 Gene3D Transferase(Phosphotransferase) domain 1 1 334 - -
Dod01g2546 460 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Dod01g2546 460 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2546 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Dod01g2546 460 PANTHER CASEIN KINASE-RELATED 1 449 - -
Dod01g2546 460 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 449 - -
Dod01g2546 460 MobiDBLite consensus disorder prediction 325 339 - -
Dod01g2546 460 MobiDBLite consensus disorder prediction 349 380 - -
Dod01g2546 460 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2546 460 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2546 Dod-Chr1 64669740 64676620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2546 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 1.66e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dod01g2546 Pkinase 4.8e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2546 K08960 - cam:101493293 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2546 01 64669740 64676620 Dod07g0696 07 9696362 9702661 PCT