Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2545 ATGGATTCGGCGCGGAGTTGGCTTCAGAAGTTTCAGCCAAGGGAGAAAGTGAGGAGTTCAAGCAAGAAGAAGGATGATATGACGGTTGGAGGGAACGAGGATTACATCAATAATGCGGGAATGGATGAGGCAACGCTTTCAAGTGTCACAAAGCAGAAGGTTGCAGCTGCAAAGCAGTATATTGAGAACCATTACAAGGAGCAAATGAAGAACCTTCAGGAGAGGAAGGAGCGCCGAATCATATTGGAAAAGAAGTTGGCCGATGCCGATGTTTCTGAGGAAGATCAAAACAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAAATGGGTGTTGATGATTTTGAGTTGTTGACTATGATTGGCAAAGGTGCATTTGGAGAGGTTAGAGTCTGTAGTGAAAAGACAACTGGCCATGTATATGCCATGAAAAAGCTAAAGAAAGCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTCAGAGCCGAGAGGAATCTCCTTGCAGAGGTTGACAGCAACTGCATAGTCAAACTCTATTGTTCTTTCCAGGATGATGAGCATCTGTATCTCATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTTATGAGAAAGGATATCTTGACTGAAGATGAAACCCGATTTTATGTAGGAGAAACAGTTCTGGCTATTGAGTCTATACATAGACACAATTATATACATAGGGACATTAAGCCTGATAACTTATTACTTGATAGATATGGACACGTGAGACTGTCAGATTTTGGACTTTGTAAACCATTAGATTGTAGTGCACTTGAAGAAACAGATCTCTCTGTGGGTCAGAATGTGAATGGATCTATACAGAATGATGATCGTGCAGCTCCAAAAAGCACACAACAAGAGCGGTTGGAGCACTGGCAGAAGAACAGGAGAACACTTGCTTATTCTACTGTGGGCACACCAGATTATATCGCTCCAGAAGTTCTATTGAAGAAAGGATATGGAATGGAGTGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTGGTGGGATATCCGCCTTTTTATTCTGATGATCCAATGGCAACGTGTCGGAAGATAGTAAACTGGAAATCTCACTTGAAATTTCCTGAAGAAGCAAGGCTATCTCCAGAGGCTAAAGATCTTGTTAGTAAGCTTTTGTGTCATGTCAGCCAGAGGCTGGGGTCAAATGGTGCAGATGAAATAAAGGCTCATCCATTCTTTGATGGGGTTGAATGGGATAAATTGTATCAAATGGAAGCCGCATTCATTCCAGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAGTTTGAAGAGTCAGGGAGCCAGGTTCAAGCATCATCAAGAGCTGGTCCTTGGAGGAAGATGCTTTCATCTAAGGACTTCAATTTTGTGGGATATACATACAAGAACTTTGAAATTGTCAACGACTATCAAGTTCCTGGGATGGCTGAATTGAAGAAGAAAGCCTCTCAATCAAAGAGGCCATCCATCAAGTCGCTGTTCGATTTGTCTGAGACATCAGGAGTGTCTGAGGCTTCAGATGCATCTGCAAGCTATCATTTTGCTCAAGGAAGTTCTCCAAAGCCCTTGCCACCCCTATTAGAGGCATCTCAAAGTGAGAAGGGATCTTCCTCCTGA 1686 0.4229 MDSARSWLQKFQPREKVRSSSKKKDDMTVGGNEDYINNAGMDEATLSSVTKQKVAAAKQYIENHYKEQMKNLQERKERRIILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCSEKTTGHVYAMKKLKKAEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEHLYLIMEYLPGGDMMTLLMRKDILTEDETRFYVGETVLAIESIHRHNYIHRDIKPDNLLLDRYGHVRLSDFGLCKPLDCSALEETDLSVGQNVNGSIQNDDRAAPKSTQQERLEHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMATCRKIVNWKSHLKFPEEARLSPEAKDLVSKLLCHVSQRLGSNGADEIKAHPFFDGVEWDKLYQMEAAFIPEVNDELDTQNFEKFEESGSQVQASSRAGPWRKMLSSKDFNFVGYTYKNFEIVNDYQVPGMAELKKKASQSKRPSIKSLFDLSETSGVSEASDASASYHFAQGSSPKPLPPLLEASQSEKGSSS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2545 561 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Dod01g2545 561 SMART pkinase_C_6 422 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
Dod01g2545 561 MobiDBLite consensus disorder prediction 1 30 - -
Dod01g2545 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Dod01g2545 561 MobiDBLite consensus disorder prediction 530 561 - -
Dod01g2545 561 Pfam Protein kinase domain 124 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2545 561 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 527 - -
Dod01g2545 561 Pfam Protein kinase C terminal domain 440 484 IPR017892 GO:0004674|GO:0005524|GO:0006468
Dod01g2545 561 MobiDBLite consensus disorder prediction 9 30 - -
Dod01g2545 561 SMART serkin_6 123 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2545 561 SUPERFAMILY Protein kinase-like (PK-like) 96 474 IPR011009 -
Dod01g2545 561 ProSiteProfiles AGC-kinase C-terminal domain profile. 422 494 IPR000961 GO:0004674|GO:0005524|GO:0006468
Dod01g2545 561 Gene3D Phosphorylase Kinase; domain 1 121 450 - -
Dod01g2545 561 Gene3D Transferase(Phosphotransferase) domain 1 207 439 - -
Dod01g2545 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 527 - -
Dod01g2545 561 CDD STKc_NDR_like 121 485 - -
Dod01g2545 561 ProSiteProfiles Protein kinase domain profile. 123 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2545 Dod-Chr1 64658408 64664117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2545 1 517 AGC Kinase Gene Family AT2G20470 79.383 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Dod01g2545 Pkinase 5.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2545 K08790 - gmx:100779528 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2545 01 64658408 64664117 Dod07g0870 07 12883133 12897550 PCT
Dod07g0693 07 9656878 9668829 Dod01g2545 01 64658408 64664117 PCT