Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2541 ATGGGTCTTAGAGACATCGGTGCTTCACTGCCTCCTGGGTTTAGGTTTTATCCTAGTGATGAGGAGTTGGTGTGTCATTACCTTTACAAGAAGATCACAAACGAGGAAGTTCTGAAGGGTACCTTGGTGGAAATTGATCTGCACATTTGCGAACCATGGCAGCTTCCTGAGGTGGCCAAGCTCAATGCAAATGAATGGTACTTCTTCAGCTTCCGGGACCGCAAATATGCCACTGGGTTTCGAACCAATAGGGCCACCACATCTGGTTATTGGAAAGCAACAGGGAAGGATCGAACGGTGCATGATCCAATCACACAAGAGGTTGTAGGGATGAGGAAGACATTGGTCTTCTACAGGAATAGAGCTCCAAATGGAATCAAAACGGGCTGGATTATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCTAAGGAGGACTGGGTGTTGTGTAGAGTGTTCCACAAAAGCAAAGAAGCTGATAACAGTGCCAAACTCATCATGTACGAGACCACACACCAATCCCCACCAACAAACCAAACCATTACCCCTGCAGGTGGTTACAACAGACTAATAACCTCATCTTTCTCTGACTCCTCCTCCATGGCAACCCATCATTTAAACCCCAACCACCAAAACAGTTATGCCATGAACTTCATTCATCACTTCTCTCTTGAAACAAATGCCAACAGCAGCACTGTTACTCAGATTAGTCCCAAGGGTACTGATGATGGATATGGTTTCATATGGGACATGGACCTCGAAGAACGTAGCTTAGAAGATGGCGTGGCCTCAAACTTGGATGGAATGAGATTCGAGGTCGATAATAGTAATAATAATAATAATAATAATAATATGGTCCTGTTGTAA 870 0.4506 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKITNEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVHDPITQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEADNSAKLIMYETTHQSPPTNQTITPAGGYNRLITSSFSDSSSMATHHLNPNHQNSYAMNFIHHFSLETNANSSTVTQISPKGTDDGYGFIWDMDLEERSLEDGVASNLDGMRFEVDNSNNNNNNNNMVLL* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2541 289 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Dod01g2541 289 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 277 - -
Dod01g2541 289 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Dod01g2541 289 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Dod01g2541 289 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Dod01g2541 289 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2541 Dod-Chr1 64580889 64585813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2541 6 233 NAC Transcription Factor Family AT1G56010 45.417 2.40e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod01g2541 NAM 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2541 - - gmx:100806284 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2541 01 64580889 64585813 Dod07g0686 07 9534870 9539918 PCT