Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2540 ATGATGGAATCAAATCACGGAAGTAATGTTGCCCAACTTAAAGAGATGGAAGATCTTTCAGTTCCTCCTGGTTTTGCATCGCTAACATCTTTCATTTTGAAAAAGGGTGAAGAGGTTAAGGAAGTTGATAAATCTGCAACGTTTCTGAATGAATCTGAGCATGAGCCAATCCATGTGGACTCTAAACATGGGATGAATGATATTGCTGCATATGACAAGATTCTTAGGAATCGACCATGGATACTCTTCGACCAGAGCAACCACAAACCTGAGGAATCTCACACTGAGCATCTTCCCATGGATGGCCCTTCAAATGCTTGTCGCCCGAAGGGGACCATTCTAGGATGCTCAAAATGCAATAATTGCCTGAAGGTAACAGCAAGGTGGCATCCTGAGGATGCAAGGAGAGAAGTCCTGGAAGAAGCCCCTGTTTTCAACCCAACAGAAGAGGAATTCAAAGACACGCTCAAATATATTGCAAGCATACGATCTAGCGCAGAACCTTACGGAATTTGCCGTATTATACCTCCTACTTGCTGGAAACCACCATGTTCTCTTGAGGAAAAGAACATATGGGAAGGCTCCAAATTTGTTGCTCAGGTTCAGCGAATTGATGGAATTCAAGTTCAGCATGCACAAGAAACTGTGGCTAGTTCTTCTGAAAATACAAAGACTAACAGGAGGAGAGTCACAAACGTAGCTTTCAACACTCAGCTTGGCAATGAAAGCACTTGCACCATAAATAAACAGGTCCAGGACATTGAAGACTGTGTCTCTGAATCTGGTCCTAAATTCACTCTCAAGACATTTAAGGAATTGGCAGATGAATTCAAAACCCAGTACTTCAATTACAAGGATAAGAATAAGATTGCGGGTTCTGATTTAAGTTTAGCTATACATCGACAGAAGTGGGAGCCATCTGTGGAGAATATTGAGGGTGAATATGGAAGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTGCTTTCTGGTAACACTTTGGAGGGTGAAGTTTTTAGCAGTGGATTTCCAACAATTTGTGATCCTCTGGAGGAATACAGTTACCCTGCTGAATATTTGAAATCTGGATGGAACTTAAATAGCATACGTTCACTGTCAGGATCTCTCATTTCTTTTGAAAGTTCCAGAGCTTCACGCAATTTTGCCCCTCGGATTCACGTAGGAATGTGCTTTTCTCCACTAAACTGGAAAGTTGAAGAGCACCAGTTATACTCGTTATCATACGTGCATTTGGGTGAGCCCAAAGTGTGGTATAGTGTCCCAGGAAGATATGCTGTCAGCTTTGAAACAATTAGGAACAAGTATCACTTAGATCTCTGTGAAGGACACCCTGATATTAATGATAACCTGATGATGCAATTATCCTCCTCCATATTGAAGGCAGAGGATATACCTGTATACCGTTGTGTTCAGTATGCTCGCGAGTTTGTTCTTGTCTTCCCAGGAGCACATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAATCAGTAAGCTTTGCTCCTCTTCAGTGGCTGCTTCATGGACAGAACGTTGTAGAGCTATATTGTGAACAGAGGAGAAAGACATTACTTTCATATGATAAGCTTTTGCTTGGAGCAGCAAGGGAAGCTGTGAGAGCACGATGGGAAATTGATCTATGTATGGAAAGCACGCCGGATAAATTAACATGTAAAGATGTTTATCAAAGAGATGGGATCCTAGCGAAAGCTTTGGGCTCTCGCATCAGGTGCGAAAGTAACAGGAGGGAATATCTCTGTAATTCTTTGAAATCACAAAGAATGGATGAAACTTTTGATGCTACCTGCAAAAGGGAATGCAGCATCTGCTTGCGTGATTTACACATGTCTGCTGTAGCTTGTTCGTGTTCAGAAAACAAGTTTGCATGTCTTAATCACGCAAAACAGCTTTGCCCTTGCACTTGGAGTGAAAAAATCCTCCTCTACCGTTATGAAATCAGCGAGTTGAATGTTCTTCATCAAGCTTCAGAAGGAAAACTAAGTTCAGTCTATAGATGGGCCAAAGAGCATCTTGGATTAAGCTTTACTTCTGTTGCCTCCAAGAGATCAAAACAAACCCCAGAAAATGCAAGTTGTTCAATGCTACCACCTTCGCGAGAGTTGAGGATGAATGATACTACATCCCAGTCAGTACTGGATACAATCTCAAAGTCAAAGCAACGGAAATTGCAGGCGACATCGAATGCACCGGAAACAAAGCAAAATGAAGTGGCATCCCAAGGCATGGGGGCTCGTTGCAGCGCATATAGTAGTCCTTCTGGCAATCAGGCGAAAGAGAAGACAACTTTACCTGAGCCAACAATCCCTGATAAGGTGAAAGCAAAAGGGAAAATGTCAGGTAAGTCAACAATTTCAAAGAAGGTAAAGAGGGACCACGAAGAATCTGCTAGAGTTTCTTCTGTTACAAACTTACGTTACATGTCCTTTTTACAAGAGAACGCTTTAATTGGAGTTTCATCTGATAGTACTAGCTCATCTTCCTCTTCAGAATCTGATGACACATAA 2547 0.4181 MMESNHGSNVAQLKEMEDLSVPPGFASLTSFILKKGEEVKEVDKSATFLNESEHEPIHVDSKHGMNDIAAYDKILRNRPWILFDQSNHKPEESHTEHLPMDGPSNACRPKGTILGCSKCNNCLKVTARWHPEDARREVLEEAPVFNPTEEEFKDTLKYIASIRSSAEPYGICRIIPPTCWKPPCSLEEKNIWEGSKFVAQVQRIDGIQVQHAQETVASSSENTKTNRRRVTNVAFNTQLGNESTCTINKQVQDIEDCVSESGPKFTLKTFKELADEFKTQYFNYKDKNKIAGSDLSLAIHRQKWEPSVENIEGEYGRIVQNPTEEIEVLSGNTLEGEVFSSGFPTICDPLEEYSYPAEYLKSGWNLNSIRSLSGSLISFESSRASRNFAPRIHVGMCFSPLNWKVEEHQLYSLSYVHLGEPKVWYSVPGRYAVSFETIRNKYHLDLCEGHPDINDNLMMQLSSSILKAEDIPVYRCVQYAREFVLVFPGAHHSGFDCGFNCSESVSFAPLQWLLHGQNVVELYCEQRRKTLLSYDKLLLGAAREAVRARWEIDLCMESTPDKLTCKDVYQRDGILAKALGSRIRCESNRREYLCNSLKSQRMDETFDATCKRECSICLRDLHMSAVACSCSENKFACLNHAKQLCPCTWSEKILLYRYEISELNVLHQASEGKLSSVYRWAKEHLGLSFTSVASKRSKQTPENASCSMLPPSRELRMNDTTSQSVLDTISKSKQRKLQATSNAPETKQNEVASQGMGARCSAYSSPSGNQAKEKTTLPEPTIPDKVKAKGKMSGKSTISKKVKRDHEESARVSSVTNLRYMSFLQENALIGVSSDSTSSSSSSESDDT* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2540 848 MobiDBLite consensus disorder prediction 829 848 - -
Dod01g2540 848 MobiDBLite consensus disorder prediction 714 776 - -
Dod01g2540 848 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 84 775 - -
Dod01g2540 848 ProSiteProfiles JmjC domain profile. 358 524 IPR003347 -
Dod01g2540 848 SUPERFAMILY Clavaminate synthase-like 263 551 - -
Dod01g2540 848 MobiDBLite consensus disorder prediction 693 707 - -
Dod01g2540 848 MobiDBLite consensus disorder prediction 693 813 - -
Dod01g2540 848 Pfam C5HC2 zinc finger 614 664 IPR004198 -
Dod01g2540 848 ProSiteProfiles JmjN domain profile. 142 183 IPR003349 -
Dod01g2540 848 SMART JmjN_1 141 182 IPR003349 -
Dod01g2540 848 SMART cupin_9 358 524 IPR003347 -
Dod01g2540 848 Gene3D Cupin 127 508 - -
Dod01g2540 848 Pfam jmjN domain 143 176 IPR003349 -
Dod01g2540 848 MobiDBLite consensus disorder prediction 798 812 - -
Dod01g2540 848 Pfam JmjC domain, hydroxylase 393 507 IPR003347 -
Dod01g2540 848 PANTHER LYSINE-SPECIFIC DEMETHYLASE 84 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2540 Dod-Chr1 64555428 64560880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2540 17 741 JUMONJI Transcription Factor Family AT1G08620 45.726 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Dod01g2540 JmjC 3e-30 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2540 - - gmx:100804864 1080.09