Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2536 ATGGAGAATGGAAATAATATTAATAGCCATTCAAAAGCTGGTTCCCTTCCTGTTTCCAACTTACAATATGATGAATTGACTTCTGCATCTCATGTCAATAAGTTGATTGAAGACCTCCACAGTCAGTCAAATAAAGTGCAAACAGCTGCTGCAGAAGAACTGAGGCTCCTTACTAAACATAACATGGAAAACCGTATCATTGTAGGGCAGTGTGGGGCAATAACACCATTACTTTCACTGCTATATTCAGACACGAAGACAATACAAGAGCATGCTGTGACAGCTCTGCTGAATTTGTCCATTAATGAAGACAACAAGGCTTTGATTATGGACGCAGGAGCCATAGAACCACTTATCCATGTTTTGAAGACAGGAAAGGATGGTGCCAAGGAGAATTCTGCGGCAGCACTATTCAGCCTCTCTGTAATGGAAAACAATAAGGCAAAAATTGGCCAGTTCTGGTGCAGTTAA 471 0.4098 MENGNNINSHSKAGSLPVSNLQYDELTSASHVNKLIEDLHSQSNKVQTAAAEELRLLTKHNMENRIIVGQCGAITPLLSLLYSDTKTIQEHAVTALLNLSINEDNKALIMDAGAIEPLIHVLKTGKDGAKENSAAALFSLSVMENNKAKIGQFWCS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2536 156 PANTHER U BOX DOMAIN-CONTAINING 12 152 - -
Dod01g2536 156 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 72 114 IPR000225 GO:0005515
Dod01g2536 156 SMART arm_5 61 101 IPR000225 GO:0005515
Dod01g2536 156 SMART arm_5 102 142 IPR000225 GO:0005515
Dod01g2536 156 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 12 152 - -
Dod01g2536 156 Pfam Armadillo/beta-catenin-like repeat 63 100 IPR000225 GO:0005515
Dod01g2536 156 Pfam Armadillo/beta-catenin-like repeat 102 141 IPR000225 GO:0005515
Dod01g2536 156 Gene3D - 12 153 IPR011989 -
Dod01g2536 156 SUPERFAMILY ARM repeat 23 151 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2536 Dod-Chr1 64506783 64507253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2536 1 152 U-box Gene Family AT3G54790 60.645 1.81e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2536 - - gmx:100800949 226.868