Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2529 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAAAGGGCCATGGACTCCAGATGAAGATCAGATCCTCATCAATTACATCAACACTTATGGCCATGCCAATTGGCGTGCTCTCCCCAAACACGCTGGGCTTTTAAGGTGTGGAAAGAGTTGCAGGCTCCGGTGGGCAAATTATCTGAGGCCCGACATCAAACGGGGCAACTTTACCAGAGAAGAAGAGGAAACAATAATCAATTTGCATGAAAAGCTGGGAAATAGATGGTCGGCTATTGCAGCCAGGTTGCCAGGCCGCACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGTTGCCACAAAACCAAGAGTGCCACGAGGAAGCAAGACGAAAACCCAAAAAAACGAAGAAGTTGGATTCTGACGCCGCCAAACAAGAACAACAACAACAACAACCAGAGACCAAACAGGATAGGCCACTATCTCCTCCACAATCCTCTAGTGACATGTCCACTCTCACCACTACTAGTGATTACAACAGCAACGAGCACAACATTAATAATAATCACGACATGTCCATAAACAACAATAATACTAGTAGTTGTAACAATGATAATAATAATATTGTTGATTCACCGGCGAATAATGATCTCGCATTGGATGAGGATTTCTGGTCGGAAGTTTTGTCCGCTGATAATTCCGTTGAGACAAGTGAACGTAATAATAATTTTCCAGCTACTATTATTAATGGTGTTGAGCAAGAGTTTCAATTTTCATTCTTCGCTGAAGAAGGGGTCCAACTTGCTGGTTCTAATTCAAGTACTATGTGTGATGGCATGGACTTTTGGTATGATGTTTACGCAAGAGCTGAGGAGTTAACAGAGTTGCCAGAGTTGTCATGTTAG 897 0.4359 MGRAPCCEKMGLKKGPWTPDEDQILINYINTYGHANWRALPKHAGLLRCGKSCRLRWANYLRPDIKRGNFTREEEETIINLHEKLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNQECHEEARRKPKKTKKLDSDAAKQEQQQQQPETKQDRPLSPPQSSSDMSTLTTTSDYNSNEHNINNNHDMSINNNNTSSCNNDNNNIVDSPANNDLALDEDFWSEVLSADNSVETSERNNNFPATIINGVEQEFQFSFFAEEGVQLAGSNSSTMCDGMDFWYDVYARAEELTELPELSC* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2529 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 292 - -
Dod01g2529 298 CDD SANT 69 112 IPR001005 -
Dod01g2529 298 Gene3D - 69 116 - -
Dod01g2529 298 MobiDBLite consensus disorder prediction 142 211 - -
Dod01g2529 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Dod01g2529 298 CDD SANT 16 61 IPR001005 -
Dod01g2529 298 MobiDBLite consensus disorder prediction 115 212 - -
Dod01g2529 298 MobiDBLite consensus disorder prediction 115 141 - -
Dod01g2529 298 PANTHER MYB15 1 292 - -
Dod01g2529 298 SMART sant 66 114 IPR001005 -
Dod01g2529 298 SMART sant 13 63 IPR001005 -
Dod01g2529 298 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Dod01g2529 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Dod01g2529 298 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dod01g2529 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod01g2529 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod01g2529 298 Gene3D - 11 67 - -
Dod01g2529 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2529 Dod-Chr1 64429688 64431911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2529 1 296 MYB Transcription Factor Family AT2G31180 46.823 5.99e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod01g2529 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2529 K09422 - gmx:100775603 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2529 01 64429688 64431911 Dod01g2529 01 64429688 64431911 ECH
Dod01g2529 01 64429688 64431911 Dod07g0880 07 13117073 13119459 PCT
Dod07g0678 07 9351791 9355842 Dod01g2529 01 64429688 64431911 PCT