Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2525 ATGGATTTTGACTCCTCCCCTTTCTTCCACCACCAATACCAAAACCTTCACTTCTTCCCTTCAAATTCCTCTGCCTCTTACGGAGAAATATCCTTCTCCTCATCATGGGATGATGATTTTTTCCTCTTCAACACCACGAATCTCAATCCCTTCAACTTCATTGACCACTCATCATCACAATCACAACCCAAGGAATCATCACCATCCTCCTCATCAGCAGTATCCAACTCTTCAGGATCTCTTGGTGGCCTTGAATCACAAGAAGTCTCCTCCAACAATATCACAACCTATATTAATATTCCACAAGTGAATGAAGAATTAACTCATGCACACTCACCGCCACCAACACAACCACAACAAAAGGAAAGTAACAAAGAGAAGAGAGCATTCAGAGGGGTAAGGAGGAGGCCATGGGGGAAATTCGCAGCCGAAATAAGGGACTCCACAAGACATGGGGTTCGAGTTTGGATCGGAACATTCGACACGGCTGAGGCGGCAGCTTTGGCTTATGATCAGGCAGCTTTGGCCACACGGGGTTCCATGGCAGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAATCATTGAAGGACTTGGCTAGCAATAAAAACTTTGAAGATGGTTCATCACCAGTGTTGGCACTCAAGAGAAAACACACCATGAGAAGAAAATCCAGCAACAACAACAAGAAGAATAAGAGGGTTGAAAAGGATAATCTTTTAGAGTTAGAGACCAATGGTGGTGGTGGTGATTATGATTCATCACACATAAATAATGTGCTGGTGTTGGAGGATTTGGGTTCTGAGTATCTAGAGCAGCTCTTGAGCATGACTTCATCCTAA 840 0.4429 MDFDSSPFFHHQYQNLHFFPSNSSASYGEISFSSSWDDDFFLFNTTNLNPFNFIDHSSSQSQPKESSPSSSSAVSNSSGSLGGLESQEVSSNNITTYINIPQVNEELTHAHSPPPTQPQQKESNKEKRAFRGVRRRPWGKFAAEIRDSTRHGVRVWIGTFDTAEAAALAYDQAALATRGSMAVLNFPEEVVRESLKDLASNKNFEDGSSPVLALKRKHTMRRKSSNNNKKNKRVEKDNLLELETNGGGGDYDSSHINNVLVLEDLGSEYLEQLLSMTSS* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2525 279 CDD AP2 130 188 IPR001471 GO:0003700|GO:0006355
Dod01g2525 279 ProSiteProfiles AP2/ERF domain profile. 129 187 IPR001471 GO:0003700|GO:0006355
Dod01g2525 279 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 276 - -
Dod01g2525 279 MobiDBLite consensus disorder prediction 54 86 - -
Dod01g2525 279 MobiDBLite consensus disorder prediction 107 132 - -
Dod01g2525 279 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Dod01g2525 279 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Dod01g2525 279 MobiDBLite consensus disorder prediction 218 237 - -
Dod01g2525 279 Gene3D AP2/ERF domain 129 189 IPR036955 GO:0003700|GO:0006355
Dod01g2525 279 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Dod01g2525 279 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Dod01g2525 279 SMART rav1_2 129 193 IPR001471 GO:0003700|GO:0006355
Dod01g2525 279 PANTHER DNA-BINDING DOMAIN 32 276 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2525 Dod-Chr1 64353624 64354952 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2525 123 274 AP2-EREBP Transcription Factor Family AT3G23240 54.605 3.47e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g2525 AP2 3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2525 K14516 - gmx:100780775 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2525 01 64353624 64354952 Dod07g0672 07 9273456 9274421 PCT