Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2524 ATGGAGGGTGCAAGGTACAGAGGGATTCGTAGGAGGCCATGGGGGAAATTTGCTGCGGAGATTCGTGACCCCACAAGACAAGGGGCTCGCATATGGCTCGGAACCTTTGACACCGCCGAACAGGCTGCAAGGGCCTATGATGCTGCTGCTTTCCATTTTCGCGGTCACAGAGCCATTCTCAACTTCCCTAACGAGTATGTCATTGGCCACTCTCCTAACAATAATAATAATCCAACCCCCTCTTCTAGTACCTCATTGCCTCCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTTCTTCTTCTACTACTTTTACTTCGCATGGTCAACAAGATGATAAGCCTACTGTTGAGTTGGAATACTTGGACAATAAGCTGTTGGAAGAACTCCTTCAGGGGCAAGAAGCTAAACGCGGCTATAGAGGCCAATAG 429 0.4802 MEGARYRGIRRRPWGKFAAEIRDPTRQGARIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYVIGHSPNNNNNPTPSSSTSLPPSSSSSSSSASSSSTTFTSHGQQDDKPTVELEYLDNKLLEELLQGQEAKRGYRGQ* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2524 142 Pfam AP2 domain 5 56 IPR001471 GO:0003700|GO:0006355
Dod01g2524 142 CDD AP2 4 64 IPR001471 GO:0003700|GO:0006355
Dod01g2524 142 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Dod01g2524 142 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Dod01g2524 142 PANTHER - 3 131 - -
Dod01g2524 142 SMART rav1_2 5 69 IPR001471 GO:0003700|GO:0006355
Dod01g2524 142 MobiDBLite consensus disorder prediction 67 111 - -
Dod01g2524 142 MobiDBLite consensus disorder prediction 66 118 - -
Dod01g2524 142 SUPERFAMILY DNA-binding domain 5 64 IPR016177 GO:0003677
Dod01g2524 142 Gene3D AP2/ERF domain 4 64 IPR036955 GO:0003700|GO:0006355
Dod01g2524 142 PANTHER DNA-BINDING DOMAIN 3 131 IPR044808 GO:0003700|GO:0009873
Dod01g2524 142 PIRSF PTI6 3 127 IPR017392 GO:0003700
Dod01g2524 142 ProSiteProfiles AP2/ERF domain profile. 5 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2524 Dod-Chr1 64335996 64336973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2524 4 137 AP2-EREBP Transcription Factor Family AT3G23230 59.701 4.80e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g2524 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2524 - - adu:107493082 147.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2524 01 64335996 64336973 Dod01g2524 01 64335996 64336973 ECH
Dod01g2524 01 64335996 64336973 Dod07g0671 07 9252378 9253173 PCT