Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2522 ATGGCATTGAACCAAAACCACTCTTACAAGCTTGAATATCACACACCACAACCTGATTCAGACCCTTCTTTACTCATATTTGCCATTGTTGTGCCCATCATATTGGCCACAGTTTTCATACTTATCATTACCAAATGCTGCTCAAACTGGCATCAACTTAACCCACTGAGATGGATTTCCATCCTAAGAGCTCCACAGAATGAAGACCCCTTCATAGCATTCTCTCCAAGGATGTGGAACTTTGGCCTTGATGAATCTGCGATCCAAGAAATCCCAGCATTGCAATTCACAAAAGGAGGAGGAGGTGGTGAGGACCAAAACGTCTATAGCTGTGTGGTTTGTTTGACTGAGTTTCAAGAACAGGATATGCTAAAAGTTCTGCCAAATTGCAGCCATGCATTTCACTTGGATTGCATTGATATTTGGCTTCAAACCAATGCAAATTGCCCTCTTTGTAGATCAAGCATTGCTGGCAACAGACAATGCCCAATGGACCATATCATAGCACCAAGCTCTTCTCCTCAGGACTCTCAACTGCTCTCGAACATGGGCAGTGATGAAGATTTTGTGGTCATTGACCTTGGGGGAGAACATGGGGGAACACTGCCACAGATGCAGCAAGAAGTGAATGACTCAAGGGAAAGCCTAGCACATAGTAGTAGTCACTCTACAAGGAAGATGGTGCAGTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGAGATGAATGCATTGATGTTAGAAAGAAAGATGACCGGTTTTCTTCTATTCAGCCTATCAGAAGATCTTTCTCAATGGACTCTGCTAATGACAGACAGGTTTACTTGGATGTTCAAGCCATCATACAACAAAATAGGCATCAAAATGAGGCCAGTGGTAGTGAAGATTGTAATAGCAGAAATCGAAGATCATTCTTTCCATTTCGTTATGGCCGGGGATCAAAAAGTGCAGTCCTTCCTCTGGAGAACGAGGTTTAA 981 0.4322 MALNQNHSYKLEYHTPQPDSDPSLLIFAIVVPIILATVFILIITKCCSNWHQLNPLRWISILRAPQNEDPFIAFSPRMWNFGLDESAIQEIPALQFTKGGGGGEDQNVYSCVVCLTEFQEQDMLKVLPNCSHAFHLDCIDIWLQTNANCPLCRSSIAGNRQCPMDHIIAPSSSPQDSQLLSNMGSDEDFVVIDLGGEHGGTLPQMQQEVNDSRESLAHSSSHSTRKMVQLKPRKCHHVSIMGDECIDVRKKDDRFSSIQPIRRSFSMDSANDRQVYLDVQAIIQQNRHQNEASGSEDCNSRNRRSFFPFRYGRGSKSAVLPLENEV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2522 326 Pfam Ring finger domain 110 153 IPR001841 -
Dod01g2522 326 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 323 - -
Dod01g2522 326 MobiDBLite consensus disorder prediction 209 226 - -
Dod01g2522 326 SUPERFAMILY RING/U-box 110 157 - -
Dod01g2522 326 SMART ring_2 111 152 IPR001841 -
Dod01g2522 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 164 IPR013083 -
Dod01g2522 326 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Dod01g2522 326 MobiDBLite consensus disorder prediction 209 228 - -
Dod01g2522 326 CDD RING-H2_PA-TM-RING 111 153 - -
Dod01g2522 326 PANTHER RING-H2 FINGER PROTEIN ATL16 6 323 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2522 Dod-Chr1 64326321 64327552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2522 26 289 C3H Transcription Factor Family AT1G04360 44.781 4.56e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2522 K19041 - gmx:100809883 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2522 01 64326321 64327552 Dod01g2522 01 64326321 64327552 ECH
Dod01g2522 01 64326321 64327552 Dod07g0885 07 13434262 13435739 PCT
Dod07g0663 07 9022305 9023315 Dod01g2522 01 64326321 64327552 PCT