Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2514 ATGGCTTCTTCTGGAACTGGAAGTGGATCTCCATGTGGTGCGTGCAAGTTCCTCAGGAGAAAGTGTGCATCTGACTGCATATTTGCACCATACTTTTTCTCTGAACAAGGGCCTGCAAGATTTGCAGCAATCCACAAGGTGTTTGGTGCAAGCAACGTTTCCAAGCTGCTGCTTCATATACCAGCTCATGATCGTTGTGAGGCCGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCTGTTTATGGCTGTGTCTCCCACATTTTTGCCCTACAACAGCAGGTGGCGTGTTTGCAGGGACAACTGATGCAAGTGAAGGCTCAGCTGGCGCAGAACCAGCAGCAGATTGAGTCCAGGAACATGGAGAATCATCAGTGGCATGCAGCAGCGAATGTTGCAGGACAAGGACAACCCATGAATCCATTCTGTCCAACTAATTACATGAACCCTATATCTCCTCAGAGCTCCCTCGAGTCAATTGATCACAGTAGCAGCATCAATGATAATGGAATAAGCATGCAAGAGAATTTCTCATTCCAAGCTTGTTCTAAGAGAAGATCATACAACAACAACAACGACTTGGGCGAGCTGCAAGAACTAGCACTCAGAATGATGAGGAACTGA 633 0.4708 MASSGTGSGSPCGACKFLRRKCASDCIFAPYFFSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQGQLMQVKAQLAQNQQQIESRNMENHQWHAAANVAGQGQPMNPFCPTNYMNPISPQSSLESIDHSSSINDNGISMQENFSFQACSKRRSYNNNNDLGELQELALRMMRN* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2514 210 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Dod01g2514 210 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Dod01g2514 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 209 - -
Dod01g2514 210 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 209 - -
Dod01g2514 210 Coils Coil 98 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2514 Dod-Chr1 64206945 64209560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2514 1 210 AS2 family AT2G42430 56.225 2.36e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod01g2514 LOB 4.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2514 K13944 - gmx:100801508 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2514 01 64206945 64209560 Dod01g2514 01 64206945 64209560 ECH
Dod01g2514 01 64206945 64209560 Dod07g0655 07 8894855 8896581 PCT