Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2509 ATGGAATTCGGCTACCCAGATGAGTATTCCAGCGAGGAAACTGATCGATCATCGGATCCGAATAATAATAATAATGATCATCATGAGATGGGAACTGGCAGATCCTATGAGTGTGTCTTCTGCAAGAGAGGGTTCACCACAGCACAAGCCTTAGGTGGACACATGAACATACACAGGAAGGACAAGGCCAACAAGAACAAACACAGTTTTACGATCCCTCCTTCTTCTTCGAGTTCAACCAAAGTTGATGAGAACAACAACAACTACTACTATGCAGATCTCGGATTCTATTCATCAGCAATTCCAAGAGGGAATAATAATCACTCTTCCACTGCTCCTCCTCATGAGGTAGATGCTTCCAATAATCACTACCACCATCAAGCTTATTTTCCTCCTGCACCACCACCCTCACATGTACAAGATTGGAGGCAGAGAAATTTGAGCTTGTATACTAATCCATCATCATATGTTCATCAAGTTAAAGACAAGGTACAAGATAACAGTGATGAGGATGGCCTAGATTTGGAGCTGAGACTTGGTCATCATCCTTAG 552 0.4257 MEFGYPDEYSSEETDRSSDPNNNNNDHHEMGTGRSYECVFCKRGFTTAQALGGHMNIHRKDKANKNKHSFTIPPSSSSSTKVDENNNNYYYADLGFYSSAIPRGNNNHSSTAPPHEVDASNNHYHHQAYFPPAPPPSHVQDWRQRNLSLYTNPSSYVHQVKDKVQDNSDEDGLDLELRLGHHP* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2509 183 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Dod01g2509 183 Gene3D Classic Zinc Finger 11 90 - -
Dod01g2509 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Dod01g2509 183 MobiDBLite consensus disorder prediction 1 30 - -
Dod01g2509 183 MobiDBLite consensus disorder prediction 68 83 - -
Dod01g2509 183 MobiDBLite consensus disorder prediction 9 23 - -
Dod01g2509 183 SUPERFAMILY beta-beta-alpha zinc fingers 34 63 IPR036236 -
Dod01g2509 183 PANTHER OS07G0101800 PROTEIN 12 183 - -
Dod01g2509 183 Pfam C2H2-type zinc finger 36 60 - -
Dod01g2509 183 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 12 183 - -
Dod01g2509 183 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2509 Dod-Chr1 64177104 64178199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2509 34 183 C2H2 Transcription Factor Family AT4G17810 31.333 5.48e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2509 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2509 - - ccaj:109812060 172.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2509 01 64177104 64178199 Dod07g0650 07 8832194 8832805 PCT