Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2508 ATGGAAGGAAACTATGCGGCCAGAAACACGCATAAAGAGGATCATGATAGCTTTGGGTTTGAGAAGCATACATGGGGAACTTCTTCATGGCCTGCGAGGAACTATTCGTGTAGCTTTTGCAAGAAAGAGTTCAGGTCAGCTCAAGCATTGGGTGGCCACATGAATGTTCACAGGAGGGATAGGGCAAGATTGAGAACATCCTTAATAACCTCCCCAACCTCGTGGCTTTCTGATTCTTCTAAATTACCTAACCCTACCATTAATCCTAATAATAACCCAAATACTCATCTATCTTCACCCTCTTCACCAATATCATCATATCTATCTGCTGATGCACGTAACAATAATAACAATAATCGTTCTCCTCTTTATAGCCCTTGTTTGACTTTATCGTCTTATTCTTCACTCTCCCTACCACCAGCTTCTATGAGTGGAGATAAGAAACCAAGGCTTGCATCCCGGGTTCCTCTTTTGAGTCCTCAAAGCAGGGAAATTAAGATGATATGTAATACAAGGAGTGGTTTAGGAGTTGAGGGGTTAAAGGGTTGTGCAGTGGATGATGAACACAAGGTCTTCAAGAATAATTATGAGCACAACATCACATTGGAGTTGGGGATAGGATTGTTTAAACACCCAAATGACAAGTTAGATTTGGAGCTTCGATTGGGGCATTAA 675 0.4163 MEGNYAARNTHKEDHDSFGFEKHTWGTSSWPARNYSCSFCKKEFRSAQALGGHMNVHRRDRARLRTSLITSPTSWLSDSSKLPNPTINPNNNPNTHLSSPSSPISSYLSADARNNNNNNRSPLYSPCLTLSSYSSLSLPPASMSGDKKPRLASRVPLLSPQSREIKMICNTRSGLGVEGLKGCAVDDEHKVFKNNYEHNITLELGIGLFKHPNDKLDLELRLGH* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2508 224 Pfam C2H2-type zinc finger 35 59 - -
Dod01g2508 224 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Dod01g2508 224 SUPERFAMILY beta-beta-alpha zinc fingers 32 61 IPR036236 -
Dod01g2508 224 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Dod01g2508 224 MobiDBLite consensus disorder prediction 73 121 - -
Dod01g2508 224 SMART c2h2final6 35 57 IPR013087 -
Dod01g2508 224 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 12 224 - -
Dod01g2508 224 PANTHER OS07G0101800 PROTEIN 12 224 - -
Dod01g2508 224 Gene3D Classic Zinc Finger 20 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2508 Dod-Chr1 64161706 64162380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2508 4 223 C2H2 Transcription Factor Family AT3G23130 36.283 7.27e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2508 zf-C2H2_6 3.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2508 - - gmx:102662947 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2508 01 64161706 64162380 Dod07g0649 07 8803924 8804770 PCT