Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2504 ATGACGGCTGAGAGGTTTTGTGAGAGCGAAGATGACAAGCCTATGTTGGAATCTGTGTTGGGCGCCGAAGCTGTTGCCTTCTTTAGTTCAGCAATTTCCAATGATGTCTTTTCTGATGTTATTGTTCCGCCTGGTACTGAATTGGTTCTCCACCAGCAGTTGTGCCATCTCGTTGAGGTGTCCAAGTGGGACTATGCCATTTTCTGGCAGGTTGTTGGCTTGAAATCTGGTGGCTATGCCGTGAAATGGGGTGATGGGCACTGTCAGGATCCCAAAGTGGGTCAAAGGAATGAGCAGGAGGATGATGCCAGACGGCGCGTGCTGCATAAGCTCCACACCTCTTGTGGCACGTCTGATTCCAAAGAGGCTACTGTTTATACAAGGTTGGATCGGGTCTCAGATGTGCATATGTTTTTCTTGTCCTCAAAATTTTATGTGTTTGGATTCGATTCCCGGTGTGGCCCTGTGAGCGCTTTTAAGCGTGGTAAATCAATTTGGGCTTCTGATGCTGCTAGTTGTTTGGACCAATATGAATCAAGGTCGTTCCTGGCGAAGTTGGCTGGTTTTCAAACTGTTGTGTTTGTGCCTCTCAAGGCTGGGGTTATCGAGCTTGGTTCAACAGGATTGATGCCTGAAGAGCAGGGTGTTTTGGAGATGGTCAGGACAACATTTGAAGAATCTAGTTCCAGACAGGCAAAGGTGTTGCCCAAGATTTTTGGTCGTGAATTAAGCCTAGGGGATACAAAATCTCAGTCTGTAACTATTAGTTTCTCACCAAAGGTTGAAGATGACTCTGGTTTCACTTCTAACTCTTATGAAGTACAAGCAGCAGCATTAGGGACAAGCCATGCTTTCGGCAATTCTTCCAATGGGTGTGTTGGGGACAGTAATGAAGCAAAATTGTTTCCTCAGCTGAATCCAATGATTGCTGGGAGTTTCAATCCTCAAGCAAGAGGTTCTTGTATAGACCTGGGCAATGAAGATTCATCCTCGCCTCTTCCAGACGAGCGGAGGCCTAGGAAACGAGGGAGAAAGCCTGCCAATGGGAGAGAGGAACCACTGAACCACGTTGAAGCTGAGAGACAAAGACGGGAGAAGCTTAACCAGAGGTTTTATGCCTTGAGAGCTGTTGTTCCTAATATATCTAAAATGGACAAGGCATCGCTCCTTGGTGATGCTATTACCCATATCACTGATCTTGAGAAGAAGATCAAGGTCTTGGAAGCTGAAAAAGGCATGATTAACAACAAGGACCAGCAGTTCCCCTTCTCAGATATCGATTTTCAGGCTAGAAAGGATGATGCGGTTGTGAGACTGAGCTTCCCCTTGGATAGTCATCCAGTTTCCGCAGTTGTTAAAACACTCAGGGAGCATCAGATTGTAGCGCCAGAGTCCAATGTTTCAACTGTGCAGGATAAGGTAATTCATACATTCTCCATAAGAACTCACGGTGGGGAAGATGCTGCTGTACAGTTGAAGGCGAAGCTTGAAGCATCTCTATTAAAAATCTGA 1512 0.461 MTAERFCESEDDKPMLESVLGAEAVAFFSSAISNDVFSDVIVPPGTELVLHQQLCHLVEVSKWDYAIFWQVVGLKSGGYAVKWGDGHCQDPKVGQRNEQEDDARRRVLHKLHTSCGTSDSKEATVYTRLDRVSDVHMFFLSSKFYVFGFDSRCGPVSAFKRGKSIWASDAASCLDQYESRSFLAKLAGFQTVVFVPLKAGVIELGSTGLMPEEQGVLEMVRTTFEESSSRQAKVLPKIFGRELSLGDTKSQSVTISFSPKVEDDSGFTSNSYEVQAAALGTSHAFGNSSNGCVGDSNEAKLFPQLNPMIAGSFNPQARGSCIDLGNEDSSSPLPDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLEKKIKVLEAEKGMINNKDQQFPFSDIDFQARKDDAVVRLSFPLDSHPVSAVVKTLREHQIVAPESNVSTVQDKVIHTFSIRTHGGEDAAVQLKAKLEASLLKI* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2504 503 Gene3D - 344 417 IPR036638 GO:0046983
Dod01g2504 503 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Dod01g2504 503 PANTHER MYC 3 501 IPR045084 GO:0003700|GO:0006355
Dod01g2504 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Dod01g2504 503 CDD bHLH_AtAIB_like 348 425 - -
Dod01g2504 503 Coils Coil 390 417 - -
Dod01g2504 503 PANTHER TRANSCRIPTION FACTOR BHLH3 3 501 - -
Dod01g2504 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 418 IPR036638 GO:0046983
Dod01g2504 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 224 IPR025610 -
Dod01g2504 503 MobiDBLite consensus disorder prediction 330 362 - -
Dod01g2504 503 SMART finulus 357 406 IPR011598 GO:0046983
Dod01g2504 503 MobiDBLite consensus disorder prediction 320 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2504 Dod-Chr1 64044346 64046870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2504 3 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.119 2.61e-154 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g2504 bHLH-MYC_N 4.9e-38 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2504 - - gmx:100819968 700.664