Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2497 ATGTCGACGGAAGAGCCAACCGTGGCCGCGGAGCCTCCACCGGCGGAGCCCGCAGCTCCCGCTGACCCACCCCAAGAGACAGAGCCCGAAAAGCCTGCTCCCAAGCCCAAGAAGGCCGCCAAGGAGCCCAAGCCCAAAAAACCTGCTGCTCCCAGATCCCGTAACCCTCCCTCTCACCCTCCCTACGAAGAGATGATTAAGGATGCGATTGCGACGCTGAAGGAGAAGAACGGCTCGAGCCAATACGCGATTGCGAAGTTCATCGAGGAGAAGCAAAAGAATCTCCCTGCGAACTTCAGGAAGCTGTTGTTGTACCATTTGAAGAAGCTCGTTGCTTCTGGGAAGCTCGTTAAGGTGAAAGGATCGTTCAAGCTCCCTCCTGCGAAGTCTTCGGCTCCCAAGCCATCTGCTCCTGCGAAGAAGAAACCCGCGGCTGCTAAGCCCAAGCCCAAATCAAAGCCCGCACCTAAGGCTAAGGAGACTAAGACAACCAAGTCAGCGGCTGCCAAAGCACTTGCTAAGGCTAAGCCTGCTGCTAAACCGAAGCCCAAGGCCAAGCCTGCTGCCAAGGCCAAGCCCGCTGCTAAGCCCAAGGCTGCTCCTGCTAAGGCGAAGTCGTCGGCTGCTGCTAAGCCGAAGGCAGCTGCGAAGCCCAAGCCGGCTGCTAAACCCAAGTCCAAGCCCAAGCCCAAGGAGAGGCCCGCCAAGGCTTCTAGAACTTCGACGAGGACTTCTCCCGGCAAGAAAGCTCCTGCTACCAAACCGGCGGCGAAGAAGGCCGCGCCTGCGAAGAAAGCTCCGGCGAAGGCGGGCGTGAAGGCGAAAGGTGCTAAATCGCCGGCGAAGAAGGCGACGGTGACTAGGAAGGGGAAGAAGTGA 879 0.5882 MSTEEPTVAAEPPPAEPAAPADPPQETEPEKPAPKPKKAAKEPKPKKPAAPRSRNPPSHPPYEEMIKDAIATLKEKNGSSQYAIAKFIEEKQKNLPANFRKLLLYHLKKLVASGKLVKVKGSFKLPPAKSSAPKPSAPAKKKPAAAKPKPKSKPAPKAKETKTTKSAAAKALAKAKPAAKPKPKAKPAAKAKPAAKPKAAPAKAKSSAAAKPKAAAKPKPAAKPKSKPKPKERPAKASRTSTRTSPGKKAPATKPAAKKAAPAKKAPAKAGVKAKGAKSPAKKATVTRKGKK* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2497 292 MobiDBLite consensus disorder prediction 177 191 - -
Dod01g2497 292 MobiDBLite consensus disorder prediction 28 49 - -
Dod01g2497 292 SMART h15plus2 56 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod01g2497 292 MobiDBLite consensus disorder prediction 10 27 - -
Dod01g2497 292 MobiDBLite consensus disorder prediction 1 69 - -
Dod01g2497 292 MobiDBLite consensus disorder prediction 119 292 - -
Dod01g2497 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 58 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod01g2497 292 SUPERFAMILY "Winged helix" DNA-binding domain 55 138 IPR036390 -
Dod01g2497 292 Gene3D - 53 142 IPR036388 -
Dod01g2497 292 PRINTS Histone H5 signature 149 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod01g2497 292 PRINTS Histone H5 signature 186 203 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod01g2497 292 PRINTS Histone H5 signature 45 66 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod01g2497 292 PRINTS Histone H5 signature 72 89 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod01g2497 292 PRINTS Histone H5 signature 208 227 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Dod01g2497 292 PANTHER HISTONE H1 2 292 - -
Dod01g2497 292 PANTHER HISTONE H1.1 2 292 - -
Dod01g2497 292 Pfam linker histone H1 and H5 family 59 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dod01g2497 292 CDD H15 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2497 Dod-Chr1 63984289 63985569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2497 18 176 Single Myb Histone (SMH) Gene Family AT1G49950 29.448 2.13e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2497 K11275 - pvy:116113303 130.183