Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2496 ATGATCCGGCCACTACGACCATTCAAGAGCAATTACCCGAATAACAGTGACCCGACCAAGGCCGATGTTGAAGGAGATGTGGCTCCAGGACAACCGAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGAGGCGTCGATCTCGACGCGCTCTTGGACATGTCTACCGATGAGCTTGTCAAGCTCTTCAGTGCACGCGCCCGAAGAAGGTTTCAACGCGGTTTGACGCGTAAGCCTATGGCGCTAATCAAGAAGCTACGGAAGGCGAAACGGGAGGCCCCAGCTGGTGAAAAGCCAGAGCCAGTGAGGACTCACCTTCGCAACATGATCATTGTGCCCGAAATGATTGGTAGCATTATTGGTGTTTACAATGGAAAGACCTTCAATCAAGTTGAAATCAAACCTGAAATGATTGGTCACTATCTAGCTGAGTTCTCAATCTCTTACAAGCCTGTTAAGCATGGAAGGCCCGGTATTGGTGCCACTCACTCCTCCAGTTGCCTACTCGTGTTGGGCTTTCCACGTGCTTCTGGTGCTCAGCCACAGTCCTCTTTCCCATGCCGCCGTTTCACTTATTTCTCCCAGATAACGTGTCAAGTTGTAGACTACCTAATGTGTGGGCTTTCTGCATGTGTTTTTCTTCATTTATGA 648 0.4923 MIRPLRPFKSNYPNNSDPTKADVEGDVAPGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSSCLLVLGFPRASGAQPQSSFPCRRFTYFSQITCQVVDYLMCGLSACVFLHL* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2496 215 Pfam Ribosomal protein S19 68 153 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dod01g2496 215 MobiDBLite consensus disorder prediction 1 30 - -
Dod01g2496 215 PRINTS Ribosomal protein S19 family signature 103 122 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dod01g2496 215 PRINTS Ribosomal protein S19 family signature 135 150 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dod01g2496 215 PRINTS Ribosomal protein S19 family signature 123 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dod01g2496 215 Hamap 30S ribosomal protein S19 [rpsS]. 66 159 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dod01g2496 215 ProSitePatterns Ribosomal protein S19 signature. 123 147 IPR020934 GO:0003723
Dod01g2496 215 Gene3D 30s Ribosomal Protein S19; Chain A 28 169 IPR023575 GO:0003735|GO:0005840|GO:0006412
Dod01g2496 215 SUPERFAMILY Ribosomal protein S19 73 154 IPR023575 GO:0003735|GO:0005840|GO:0006412
Dod01g2496 215 TIGRFAM uS19_arch: ribosomal protein uS19 37 165 IPR005713 GO:0003735|GO:0006412|GO:0015935
Dod01g2496 215 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 21 165 IPR002222 GO:0003735|GO:0005840|GO:0006412
Dod01g2496 215 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 21 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2496 Dod-Chr1 63964077 63970128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2496 28 164 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 89.781 2.66e-86 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2496 K02958 - nnu:104612419 279.256