Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2495 ATGCCTACACCTACTGCTTCTGACGCGCTCGCAATCCACAGGGGCCCTCCTCAGCCCACCAAGGCCCACAAGGAGGCCCATTTCCGCGGCGTCCGCAAGCGCCCATGGGGCCGCTTCGCCGCCGAGATCCGCGACCCCTGGAAGAAGACCCGAAAGTGGCTCGGCACCTTCGACACCGCCGAGGAGGCCGCCAGGGCCTACGACCAAGCCGCCAGGACCCTTCGCGGCCCCAAGGCCAAGACCAACTTCGCCTACGTCCTCACCCCCTCCCTCTCCCTTCCTCCGCCCCCGCCCATCGCCGCCGGAGGCGGTGGGGGCGGCAGCGGCGTCTTTGGAAGGCGCGTGGAGTTCTGGTCTCCCTCCCCGGCGTACTTCATGACGGATGTGGCCGCCGAAGCGCCGGTGAGGTCGGAGTACAAGGGATACAAGTTGGAGAATATGGACGTTGTGGTGAGCAAGGAAGAGGAGAAGATGCGGAAGGAGAAGAAGCCGTTTTTGTTCGACCTTAACCTGCCGGCGCCCCCCCTTTGA 531 0.6554 MPTPTASDALAIHRGPPQPTKAHKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDQAARTLRGPKAKTNFAYVLTPSLSLPPPPPIAAGGGGGGSGVFGRRVEFWSPSPAYFMTDVAAEAPVRSEYKGYKLENMDVVVSKEEEKMRKEKKPFLFDLNLPAPPL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2495 176 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Dod01g2495 176 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Dod01g2495 176 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 135 - -
Dod01g2495 176 Pfam AP2 domain 27 76 IPR001471 GO:0003700|GO:0006355
Dod01g2495 176 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Dod01g2495 176 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Dod01g2495 176 CDD AP2 26 86 IPR001471 GO:0003700|GO:0006355
Dod01g2495 176 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Dod01g2495 176 MobiDBLite consensus disorder prediction 1 29 - -
Dod01g2495 176 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Dod01g2495 176 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2495 Dod-Chr1 63952384 63953143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2495 20 83 AP2-EREBP Transcription Factor Family AT5G44210 82.812 1.70e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod01g2495 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2495 K09286 - gmx:100816599 193.356