Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2492 ATGGCGAATCAGGTTGTGAAGGTGAGAAGGGACACGATTGCGGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACCACCATATCCGAATGCCTTCACACGTTTTGCAGGAAGTGCATTTATGACAAAATTACAGATGAGGAATTAGAGTGCTGTCCAATTTGCAACATTGATTTGGGATGTGTTCCACTCGAAAAACTAAGGCCAGATCACATTTTGCAAGATGTAAGGGCCAAAGTTTTCCCGTTAAAGGGAAGAAAGGTGAAGACACCTGAACCTGTCCCCTCAGTACCATTACCAGCTAAAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTACACAAGCAACCATGACAGGAAGAAGAACAAAACCTACTAGAAAGGCCAGTGGTCTGCGGGCCACTAGTTTTGCTGTTGAAAAACCCATTAAAAAAGAGGAAGAATTACCAGAAGATCGTCAAGAGAGTTCAAGCTCACCTGACAAGCTTGCTCAGAATGCTGGACAGAGTTCGTCCCCTTGTGAGGGCAGTCAATCCTTACCCAATAAAGGAACAGAGAATGGGGCTGAGCCATGGGATGCAAAATTGGATCTTTGGAAACCTTTAAATTGTTTAGTAGAGGTTGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAAGGGTCTGATGCTAAACTAGAATCTGTTCAAGTAAATGAGAATGATTCTGCAGTACAGAGAAGTAAAAATAAGGAAAATAAACGCAAGGCGAAAGTTGAGGATGAAAAGATTAGTGCTGGTCTTATCTCTTCAGATACGGCAAAACCCAATAAATTGCGCAGAGTTCGCCGTAAAAAGGAGCCTGCTTTTGGAGAATCAGGCATATCTCCCCAAGCCGTGCTGGATTCTACCAGCAGCAAACTCCTAAGGACTGGTCCAATTTGGTTCTCCTTAGTTGCTTCTGAGAACCAGGAAGGAGATGCACCCTTGCCTCAAATTCCAGCAAGTTACTTGAGAATAAAGTAA 1035 0.4386 MANQVVKVRRDTIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHILQDVRAKVFPLKGRKVKTPEPVPSVPLPAKRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASGLRATSFAVEKPIKKEEELPEDRQESSSSPDKLAQNAGQSSSPCEGSQSLPNKGTENGAEPWDAKLDLWKPLNCLVEVASRSKSFKSSVQGSDAKLESVQVNENDSAVQRSKNKENKRKAKVEDEKISAGLISSDTAKPNKLRRVRRKKEPAFGESGISPQAVLDSTSSKLLRTGPIWFSLVASENQEGDAPLPQIPASYLRIK* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2492 344 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Dod01g2492 344 MobiDBLite consensus disorder prediction 149 168 - -
Dod01g2492 344 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 344 - -
Dod01g2492 344 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Dod01g2492 344 SMART ring_2 19 59 IPR001841 -
Dod01g2492 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 113 IPR013083 -
Dod01g2492 344 MobiDBLite consensus disorder prediction 226 247 - -
Dod01g2492 344 MobiDBLite consensus disorder prediction 226 264 - -
Dod01g2492 344 MobiDBLite consensus disorder prediction 112 134 - -
Dod01g2492 344 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Dod01g2492 344 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 344 IPR044807 GO:0004842
Dod01g2492 344 MobiDBLite consensus disorder prediction 248 264 - -
Dod01g2492 344 MobiDBLite consensus disorder prediction 91 202 - -
Dod01g2492 344 MobiDBLite consensus disorder prediction 169 195 - -
Dod01g2492 344 SUPERFAMILY RING/U-box 14 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2492 Dod-Chr1 63902964 63906830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2492 2 344 C3H Transcription Factor Family AT2G30580 54.598 2.47e-114 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2492 K16277 - gmx:100815540 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2492 01 63902964 63906830 Dod07g0627 07 8411596 8416783 PCT