Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2481 ATGGAAGTTGGGCTGAAGAAGACCGAGAAGATGGGGTTTGAGGAAACCGAGCTGAGGCTGGGGTTGCCTGGAAACGGGCCCAAAGCCACTGAAGGAGGAGGAGATGTGGTGAGGAAGAGAGGATTCTCCGAGACTGAGACTGAGACTGAGACTGGGAATAATGAGACTGAGACTGAGACTGAGACTGTGGATTTGATGCTTAATCTCTCCTCCAAGGAACCAAATAATCCTGGGGCAGATCCAACTGTTAAATCCAAGACTTTGCCTAAGGAGAAGACCCTTCTGCCCGCAGATCCGGCCAAGCCTCCTGCCAAGGCGCAAGTGGTAGGATGGCCACCTGTCCGGTCCTTCCGGAAGAACATGCTAGCTGTGCAAAAGAGCAATGGAGAGGAGAACGAAAAGAATAGCAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCACCCTACCTTCGCAAGGTGGACTTGAAGATGTACAAGAGTTACCAAGAGCTCTCTGATTCCTTAGGCAACATGTTCAGTTCCTTCACCATTGGCAATTGTGGATCCCAAGGAATGAAAGACTTCATGAATGAGAGCAAGCTGATGGATCTTTTGAACGGCTCTGATTATGTCCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTGCGTATCATGAAAGGAAAGGAGGCTATTGGTCTTGCACCAAGAGCCGTGGAGAAATGCAAGAACAGGAGCTAG 777 0.4916 MEVGLKKTEKMGFEETELRLGLPGNGPKATEGGGDVVRKRGFSETETETETGNNETETETETVDLMLNLSSKEPNNPGADPTVKSKTLPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSNGEENEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYQELSDSLGNMFSSFTIGNCGSQGMKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAVEKCKNRS* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2481 258 Pfam AUX/IAA family 15 249 IPR033389 -
Dod01g2481 258 Gene3D - 134 252 - -
Dod01g2481 258 ProSiteProfiles PB1 domain profile. 140 240 IPR000270 GO:0005515
Dod01g2481 258 SUPERFAMILY CAD & PB1 domains 132 239 - -
Dod01g2481 258 MobiDBLite consensus disorder prediction 1 112 - -
Dod01g2481 258 MobiDBLite consensus disorder prediction 1 16 - -
Dod01g2481 258 PANTHER AUXIN-INDUCED PROTEIN AUX28 8 251 - -
Dod01g2481 258 MobiDBLite consensus disorder prediction 58 82 - -
Dod01g2481 258 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 251 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2481 Dod-Chr1 63782492 63785949 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2481 130 248 B3 DNA Binding Superfamily AT4G23980 32.773 6.09e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod01g2481 AUX_IAA 4.5e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2481 K14484 - gmx:100810013 377.481