Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2479 ATGGGAAGCTATGAAACTGAGCTGAATCTCAAGGCAACAGAGTTGAGATTGGGATTGCCGGGAGGCGATGAGCCAGAGAAGCTTTCATGCGGTGGCTATGGTGTTAGAAGCAACAAGAGATCTTCACCGGAATCGAGTGTGGAAGAGTGCATGAGCAACGTTGATTCTAATGCCACTGGTGATCATGACCATGACAGTGTCCAGCCTTCAAAGGTGCAAGTAGTGGGATGGCCACCAATTCGATCATTTAGGAAGAACAGTATGCAGCAGAAGAAGAAGGGTGAACAAGGTGATGGAGCTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTCTATGAGAGCTACTCAGAACTCCTAAAGGCTTTGGAAGATTTGTTCAAGTGCACATTTGGTGAATATTCAGAAAGAGAAGGGTACAATGGATCTGAATATGTTCCTACTTATGAAGATAAGGATGGTGACTGGATGCTGGTTGGAGACGTTCCATGGGACATGTTCATGTCCTCCTGCAAGAGGCTGAGAATTATGAAAGGATCGGAAGCAAAGGGGTTGGGTTGTTTATGA 594 0.4596 MGSYETELNLKATELRLGLPGGDEPEKLSCGGYGVRSNKRSSPESSVEECMSNVDSNATGDHDHDSVQPSKVQVVGWPPIRSFRKNSMQQKKKGEQGDGAGMYVKVSMAGAPYLRKIDLKVYESYSELLKALEDLFKCTFGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPWDMFMSSCKRLRIMKGSEAKGLGCL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2479 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 195 IPR003311 GO:0005634|GO:0006355
Dod01g2479 197 Gene3D - 96 197 - -
Dod01g2479 197 PANTHER AUXIN-INDUCED PROTEIN 3 195 - -
Dod01g2479 197 MobiDBLite consensus disorder prediction 17 69 - -
Dod01g2479 197 ProSiteProfiles PB1 domain profile. 101 188 IPR000270 GO:0005515
Dod01g2479 197 SUPERFAMILY CAD & PB1 domains 99 187 - -
Dod01g2479 197 MobiDBLite consensus disorder prediction 35 57 - -
Dod01g2479 197 Pfam AUX/IAA family 41 195 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2479 Dod-Chr1 63765734 63767171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2479 86 194 B3 DNA Binding Superfamily AT2G46530 34.862 2.39e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dod01g2479 AUX_IAA 1.6e-58 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2479 K14484 - gmx:100792134 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2479 01 63765734 63767171 Dod07g0617 07 8283822 8285713 PCT