Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2453 ATGTTCCCCACAGCTATGCCCGAAGACGCCAGTGTTTCTTCATCAGGTACAAGAGTTCAGAACTTGAGTGGACTAAACCACGTGATCTCAAATGTTTCTCTTCATCAACAGCCTCAAAAGGTCAAGAAAAAGAGAAGCCTCCCTGGAAACCCAGACCCAGATGCTGAAGTGATTGCGTTATCCCCAAAGACCCTTCTAGCCACGAATAGGTTTGTTTGCGAGATCTGCCACAAGGGTTTCCAGAGAGATCAGAACCTCCAGCTTCATAGGAGAGGCCACAACCTCCCTTGGAAGCTGAAGCAAAGGAGCACCAAGGAGGTGAAGAAGAAAGCCTACGTTTGCCCTGAACCTTCTTGCGTTCACCACAACCCTTCAAGGGCTTTGGGGGATCTTACTGGAATCAAGAAGCACTACTGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGGCGTATGCGGTTCAATCAGATTGGAAGGCTCACTCTAAAACCTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACACACAGGGCATTCTGTGAGGCACTGTCTGAAGAAACTGCAAGACTATCAGCAACCGAAATAGCCGCTGCTGCGACAAACCCATTGCTACTCCACTCTCTCTTCCTCTTCCCACCAGCCCAACAGAATTTCCAAAACCACATCACCAATTTCAATCCCTGGGGCTCATCATCTCAAGAAAACCCTAACCCTAGCATCAACAATAATAACATTAATGCAGCAGCCCTCCACATCAAGCCCGAAGCTCAAACCTTCCCTGACCTCGCCTTCTCTTCTTCCACCCTGACACTTCTTCAAAGCCACCATGATCAGCACCACCCCAGCTGGCACTTAACGGCGTCGACCTCCTCCAATGCCGCCACCTCAGCAACCGCGTTGCTCCAGAAGGCATCAATCTCTGGTGCCATCAGTACTGGCCCAGGTTCTTCTTCCGCTGCTGGTGTTGCACTGCAACAACGGCACTCACTGGGTCACGCGACTCGGCTCGGCACGTGCGAGTTTGGAACGGTGAGTCAACTCGACTCGGTGATGGGCGGCGGCGTGAGAGAGCTCAAGAACGACCGTCTCACGAGGGACTTTCTGGGACTGACAGTGGTGGATGCCAACGGCGGAAACGACACACCGGTTGACGTTAGCATGAACGTGAATGATATGCTAACGTTCACGGGGGGTGTAGAGTACCACCATGCTCATCATATTCACCAACCCCTGCAAGGGTTTGGATTCTTTGGGACAAACAGCAGTGCGCCGGAGACTTGGGGGAATTGTTGA 1338 0.512 MFPTAMPEDASVSSSGTRVQNLSGLNHVISNVSLHQQPQKVKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSTKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKAYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCEALSEETARLSATEIAAAATNPLLLHSLFLFPPAQQNFQNHITNFNPWGSSSQENPNPSINNNNINAAALHIKPEAQTFPDLAFSSSTLTLLQSHHDQHHPSWHLTASTSSNAATSATALLQKASISGAISTGPGSSSAAGVALQQRHSLGHATRLGTCEFGTVSQLDSVMGGGVRELKNDRLTRDFLGLTVVDANGGNDTPVDVSMNVNDMLTFTGGVEYHHAHHIHQPLQGFGFFGTNSSAPETWGNC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2453 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Dod01g2453 445 MobiDBLite consensus disorder prediction 31 54 - -
Dod01g2453 445 Gene3D Classic Zinc Finger 105 195 - -
Dod01g2453 445 Gene3D Classic Zinc Finger 67 94 - -
Dod01g2453 445 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 5 424 - -
Dod01g2453 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 424 - -
Dod01g2453 445 SMART c2h2final6 112 142 IPR013087 -
Dod01g2453 445 SMART c2h2final6 147 167 IPR013087 -
Dod01g2453 445 SMART c2h2final6 71 93 IPR013087 -
Dod01g2453 445 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Dod01g2453 445 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2453 Dod-Chr1 63482964 63487609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2453 19 433 IDZ Gene Family AT4G02670 51.852 1.08e-127 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2453 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2453 K25870 - gmx:100812334 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2453 01 63482964 63487609 Dod06g1768 06 24428350 24432426 PCT
Dod07g0599 07 7940216 7945252 Dod01g2453 01 63482964 63487609 PCT