Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2446 ATGGATCAGTACGAAATTCTAGAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTTCTTGTTAGGCACAAGCATGAAAAGAAAAAGTATGTCCTCAAGAAGATCCGCCTCGCTCGCCAGACTGACAGAACCCGTAGGTCTGCGCACCAGGAGATGGAGCTTATATCTAAAGTTCAAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATTGTCATCGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTCATTTTCCTGAAGAGAAAATTTGTAAGTGGCTTGTTCAACTGCTGATGGCGCTTGATTACTTGCATGTAAATCATATTCTTCATCGAGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATGTACGTCTAGGTGACTTTGGTCTTGCTAAAGTGTTGACATCTGATGATCTTGCTTCCTCGGTTGTGGGGACTCCAAGTTATATGTGTCCAGAGCTTCTTGCTGATATACCCTATGGTTCTAAATCAGATATCTGGTCATTGGGGTGCTGTGTTTATGAAATGGCTGCTCACAGGCCAGCTTTTAAAGCTTTTGATATACAAGCATTGATTAACAAAATAAACAAGTCTATAGTGGCTCCACTGCCTACGATGTATTCTGGTGCTTTCCGAGGGCTAGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAACTGCTGCTGAGTTACTGAATCATCCACATCTTCGGCCTTACATTCGTAAAATTCACCTAATACTAAATAGCCCCAGAAGAAGTACTTTTCCATATCAATGGCCTGGACCAAACTATGTAAGGAGAACTCGGTTTATAAAGCCAGAATCTGTTTCTTCTCTTTCTAGCCAAGATAAACCCTTTTCATTAGGCAATGGCAGGGCCTTGAATCCCAGTGTTTCTGGAACTGAACAAGGCTCTCGATGTTCTACTCAAGGAGCACATGGATCATCCAATTATTCAAAAGAGAAGATGTATGAACTGTCTGTTGGCTGTGTCCATGACAGATGCAATAGTAACAAATCAAAAGCCAGAAAGTCCTCAACTGTTGAGAGAGCCCCAAGATTGAGAAAAGCTAAAGATTCTGTCACCCCAAAAGGGCAGCTAATGACACCATCAAAGATATCCTGTCCTGATTCAAGGCGTGGTTCGCTTCCAGTATCACATACACCCGACCGTAGAGCACCCCTTCCACTCCCTACAAGAGCCAAGGCCAGAACAACAACCCATTATAGAGCCGCCAATGTTGTTCTCCTCCGAAGTGTGGACTCTCCAGATGTTTCTGTGAATGCGCCGCGAATCGACAAGATTGCAGAATTCCCTCTGGCCTCATGTGAGGATCATTTCTTCCCTGCCCATAGACCATCATCAACATCAGCACGCTGCTCCTCTAGTTCATCTGGTGGCAGTGCTGAATGCTCATTCACAAAGGACAGGTGCACAATCCAGCAGGTTGTGGACAACGTCACTGTCAACACCAATGATGCTTGTTATGGTACAAAGCTAAGTGAACGCTCTAATCTTGTAAAAGGTGGTGTTTCAAGCAATCCCTCTGCTGAGTTGCAACATCAAAAGCGAAGATTTGACACCTCATCTTACCAGCAACGTGCAGAGGCATTGGAGGGGTTGCTGGAGTTCAGTGCAAGGCTACTGCAGCAACATAGGTTTGAAGAGCTTGGGGTGTTGTTGAAGCCATTCGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAGAGCTTCAAAGAAACTACTAATGTGGTCTAA 1836 0.4395 MDQYEILEQIGKGSFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVQNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANGVHFPEEKICKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDVRLGDFGLAKVLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHRPAFKAFDIQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPTAAELLNHPHLRPYIRKIHLILNSPRRSTFPYQWPGPNYVRRTRFIKPESVSSLSSQDKPFSLGNGRALNPSVSGTEQGSRCSTQGAHGSSNYSKEKMYELSVGCVHDRCNSNKSKARKSSTVERAPRLRKAKDSVTPKGQLMTPSKISCPDSRRGSLPVSHTPDRRAPLPLPTRAKARTTTHYRAANVVLLRSVDSPDVSVNAPRIDKIAEFPLASCEDHFFPAHRPSSTSARCSSSSSGGSAECSFTKDRCTIQQVVDNVTVNTNDACYGTKLSERSNLVKGGVSSNPSAELQHQKRRFDTSSYQQRAEALEGLLEFSARLLQQHRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETTNVV* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2446 611 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2446 611 SUPERFAMILY Protein kinase-like (PK-like) 1 319 IPR011009 -
Dod01g2446 611 CDD STKc_Nek 3 258 - -
Dod01g2446 611 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 598 - -
Dod01g2446 611 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Dod01g2446 611 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Dod01g2446 611 PANTHER SERINE/THREONINE-KINASE NEK4 1 598 - -
Dod01g2446 611 MobiDBLite consensus disorder prediction 298 340 - -
Dod01g2446 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Dod01g2446 611 MobiDBLite consensus disorder prediction 358 419 - -
Dod01g2446 611 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2446 611 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2446 611 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Dod01g2446 611 MobiDBLite consensus disorder prediction 358 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2446 Dod-Chr1 63401252 63406721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2446 10 263 MAP Kinase Kinase Kinase AT1G53570 31.660 9.08e-38 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dod01g2446 Pkinase 2.6e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2446 K08857 - gmx:100810347 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2446 01 63401252 63406721 Dod01g2446 01 63401252 63406721 ECH
Dod01g2446 01 63401252 63406721 Dod06g1776 06 24539789 24550265 PCT