Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2425 ATGGCGACACCGCCGCCGATGGGGCCACCGGGAAATGCGATGTTTGAGGGAGGGCCGCCACAAGCGCCGCCAACCCCGGGGGTGGACATGACCGGAATATGCTTCAGAGACCAGCTCTGGCTGAACACGTATCCCCTGGATCGTAACCTCGTCTTCGATTACTTTGCCCTGTCTCCCTTCTATGACTGGACCTGCAACAACGAACAGCTTCGCCTCCGCTCTGTCCACCCTCTCGACATCTCCCAACTCTCGAAAATGACAGGTGTAGAGTATATGCTCAGTGAAGTTTTGGAGCCCCATCTTTTTGTTATTCGCAAGCAAAAGAGAGACAACCCTGAGAAAGTTACGCCGATGCTAGTGTATTACATCTTGGATGGTTCGATATACCAGGCACCACAACTATGCAATGTTTTTGCTGCTAGAATTGGAAGGGCACTCTATTATATACAAAAGGCCTTTACTACAGCTGCCTCAAAGCTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGACTGCAGTGACGGAACCAAAGGCTGGTAAGGAGACAATTGACTTAAAGGAAGTTAGGCGTGTGGATCATATTCTTGCATCCCTGCAACGCAAGTCTTGCACTAGTGCATCAGAGGTTTTACCTGTTGTGGTTGTCCCAAATACACTAGAATTTTACCACATGCTCTGCAACTTTCCGGTTTGTCATATCCTTGATCGTTGTATGAAGTGTGCATTGATGCTGCAGCTACCACCAGCTCCACCTCCGCCACCATTTCCAGAAGGATATGTTCCACCTCCAACAGGAGAAGCTGACAAAGGCTCTGAAGCTAATGAATCAGCAGAGGTGCAAGCTCCTCCGGTTGATCCCATCGTCGATCAAGGACCTGCAAAAAGAATGAAGTTGATGTAA 903 0.4862 MATPPPMGPPGNAMFEGGPPQAPPTPGVDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRLRSVHPLDISQLSKMTGVEYMLSEVLEPHLFVIRKQKRDNPEKVTPMLVYYILDGSIYQAPQLCNVFAARIGRALYYIQKAFTTAASKLEKIGYVDSENETAVTEPKAGKETIDLKEVRRVDHILASLQRKSCTSASEVLPVVVVPNTLEFYHMLCNFPVCHILDRCMKCALMLQLPPAPPPPPFPEGYVPPPTGEADKGSEANESAEVQAPPVDPIVDQGPAKRMKLM* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2425 300 MobiDBLite consensus disorder prediction 1 26 - -
Dod01g2425 300 MobiDBLite consensus disorder prediction 254 300 - -
Dod01g2425 300 Pfam MED6 mediator sub complex component 33 158 IPR007018 GO:0003712|GO:0006357|GO:0016592
Dod01g2425 300 MobiDBLite consensus disorder prediction 1 27 - -
Dod01g2425 300 Gene3D Mediator complex, subunit Med6 27 156 IPR038566 -
Dod01g2425 300 PANTHER MED-6-RELATED 16 205 IPR007018 GO:0003712|GO:0006357|GO:0016592
Dod01g2425 300 PANTHER MED-6-RELATED 241 298 IPR007018 GO:0003712|GO:0006357|GO:0016592
Dod01g2425 300 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 16 205 - -
Dod01g2425 300 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6 241 298 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MED6 Dod01g2425 Med6 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2425 K15128 - jre:109007876 391.349