Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2419 ATGGCCACCACACGCAGAAGCTTGAAGCGTAAGCTCGAACGAGATTTCAACGGCAACGAAGAAGGAGATCAGAGCAAGGTGCAGGTCAGGGAAGGCTCTCAACATCATCAGAAAGATATCTCCGCTCAGATTCTTCGACAAATAGAGCTTCTCAATTCCCCAGTACTCCCAACCTCCGTGTCCGACCGTGTCTCTGTTCTGAGAGCGCTCCACGTCCTCTCCGGATTCGCCAAGAAGGAAGAAATTGTGGATAGCCTAGTGGAGTGTGGTGCTATACCTGTTCTTGTGAGGCTTTTAGAGGTGTCATCTGCTGCTGCTGGTGACGATGATGATGTTTATGACCCACACAAGAATGAGTTGGAAAAAGGATGTGCAATGATTCTTGGGCTTCTTGCTGTCAAGCCAGAGTATCAACAACTTGTTGTTGACGCTGGAGCCTTACCGTATCTTGTACGTTTGTTAAGGAGGCACAAAACCGATAGCATTTCTCAAGTTCTTATCGGTCTTCTAAGGAGAGCAGCTGATGCAATAACCAACCTTGCACATGAAAATACAAGCATTAAAGCCCTTGTCAGGACGGAAGGTGGTATCCCTCCTCTGGTTGAATTGCTTGAATTCAATGATACAAATGTACAGAAAGCAGCTGCAGGGGCTTTGCGAACTCTTGCATTTAAAAATGATGAAAATAAAAATCAGATTGTTGGCTGCAATGCATTACCCACTCTTGTACTAATGCTTCGATCGGAGGATCCTGCGCTACATTATGAGGCAGTTGGTGTGATTGGAAATCTGGTCCACTCTTCACCAAATATTAAGATAGAAGTTCTTCAGGCTGGGGCCTTACAACCTGTCATTGGATTACTTAGTTCTAGCTGTGCAGAGAGTCAAAGAGAAGCAGCCCTTTTACTGGGTCAATTTGCTTCAACGGATACAGATTGCAAGGTTCACATTGCCCAAAGAGGGGCTATTCAGCCACTAGTTGACATGCTGAAGTCTCCAGATGCACAGCTTAGGGAAATGGCGACTTTTGCTCTTGGGAGGTTGGCACAGAATTTACACAATCAAGCTGGAATTGCTTATCATGGGGGTATTGAACCTCTAATCAATCTTCTTGGCTCAAAGAATGGGTCCATCCAACACAATGCAGCTTTTACTCTCTACGGTCTTGCTGATAATGAGGACAATGTTGCAGACATTATTAAGGCAGGTGGTTTTCAAAAACTGCATGATGGAAACTTCAAAGCTCAACCTACTAGAGAGTGTGTGGCAAAGACCTTAACGAGATTAAAGGAGAAGATGCATGGGCGAGTACTGAAGCACTTGTTATATCTTATGCGCTTTGCAGAAAAGGGTCTTCAACGACGTGTAGCTCTTGCTCTTGCTCATTTAAGTTCTATTGATGATTGCAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGCTGGAACTTCTTGAATCTACAAAACTTAAGCAGGCAGGTGCTGCTTCACTGGCACTTCACAAGTTGGCTACCAGAGCCATTTCTGTCCCTCTTGTTGATGTCGCTCCTCCATCACCAACACCCCAGGTGTACTTGGCCAAGCAATATGTAAACAATCCAAAACTTTCTGATGTCACATTCTTGGTTGAAGGCAAAAGATTCTACGCCCATAGATCTTGTTTAATTGCTTCTGATATATTTCGCGCAATGATTGACGGTGGTTATAGGGAAAGGGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGGATGTCTTTGAGTTGATGATGAGATATATATACACTGGAACAGTAGATGTCAATTTGGATATTGCTCAGGATCTGCTCAAGGCTGCTGATCAGTATCTTCTAGAGGGTCTTAAGCGACTTTGTGAACATACCATTTCCCAGGATATTTCTGCGGAAAATGTCACAATAATGTACCAGATGTCCGAGGCTTTCAATGCAACGTCATTAAGACGGGCATGCATAATGTTTGTGTTGGATCAATTTGATAAGCTGAGTACCAAACCATGGTATGGTTACCTGATTCGTTGCATGGTAGCAGACATACGCAAATTATTCTCAACTTTACTTGCCAAGCCCAGTCTTGCTGACTCGTGA 2109 0.4348 MATTRRSLKRKLERDFNGNEEGDQSKVQVREGSQHHQKDISAQILRQIELLNSPVLPTSVSDRVSVLRALHVLSGFAKKEEIVDSLVECGAIPVLVRLLEVSSAAAGDDDDVYDPHKNELEKGCAMILGLLAVKPEYQQLVVDAGALPYLVRLLRRHKTDSISQVLIGLLRRAADAITNLAHENTSIKALVRTEGGIPPLVELLEFNDTNVQKAAAGALRTLAFKNDENKNQIVGCNALPTLVLMLRSEDPALHYEAVGVIGNLVHSSPNIKIEVLQAGALQPVIGLLSSSCAESQREAALLLGQFASTDTDCKVHIAQRGAIQPLVDMLKSPDAQLREMATFALGRLAQNLHNQAGIAYHGGIEPLINLLGSKNGSIQHNAAFTLYGLADNEDNVADIIKAGGFQKLHDGNFKAQPTRECVAKTLTRLKEKMHGRVLKHLLYLMRFAEKGLQRRVALALAHLSSIDDCKTIFIDNNGLELLLELLESTKLKQAGAASLALHKLATRAISVPLVDVAPPSPTPQVYLAKQYVNNPKLSDVTFLVEGKRFYAHRSCLIASDIFRAMIDGGYREREAKDIEIPNIKWDVFELMMRYIYTGTVDVNLDIAQDLLKAADQYLLEGLKRLCEHTISQDISAENVTIMYQMSEAFNATSLRRACIMFVLDQFDKLSTKPWYGYLIRCMVADIRKLFSTLLAKPSLADS* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2419 702 SUPERFAMILY POZ domain 529 633 IPR011333 -
Dod01g2419 702 Pfam BTB/POZ domain 530 632 IPR000210 GO:0005515
Dod01g2419 702 Gene3D - 353 434 IPR011989 -
Dod01g2419 702 ProSiteProfiles BTB domain profile. 538 604 IPR000210 GO:0005515
Dod01g2419 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 195 IPR000225 GO:0005515
Dod01g2419 702 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 3 701 - -
Dod01g2419 702 SMART arm_5 466 506 IPR000225 GO:0005515
Dod01g2419 702 SMART arm_5 310 350 IPR000225 GO:0005515
Dod01g2419 702 SMART arm_5 184 224 IPR000225 GO:0005515
Dod01g2419 702 SMART arm_5 226 266 IPR000225 GO:0005515
Dod01g2419 702 SMART arm_5 134 182 IPR000225 GO:0005515
Dod01g2419 702 SMART arm_5 351 391 IPR000225 GO:0005515
Dod01g2419 702 SMART arm_5 268 308 IPR000225 GO:0005515
Dod01g2419 702 SMART arm_5 79 133 IPR000225 GO:0005515
Dod01g2419 702 MobiDBLite consensus disorder prediction 1 33 - -
Dod01g2419 702 Gene3D - 37 352 IPR011989 -
Dod01g2419 702 SUPERFAMILY ARM repeat 62 171 IPR016024 -
Dod01g2419 702 Gene3D - 435 511 IPR011989 -
Dod01g2419 702 SUPERFAMILY ARM repeat 171 506 IPR016024 -
Dod01g2419 702 Gene3D Potassium Channel Kv1.1; Chain A 518 663 IPR011333 -
Dod01g2419 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
Dod01g2419 702 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 701 IPR044282 -
Dod01g2419 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Dod01g2419 702 SMART BTB_4 538 634 IPR000210 GO:0005515
Dod01g2419 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 195 230 IPR000225 GO:0005515
Dod01g2419 702 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 321 363 IPR000225 GO:0005515
Dod01g2419 702 Pfam Armadillo/beta-catenin-like repeat 188 223 IPR000225 GO:0005515
Dod01g2419 702 Pfam Armadillo/beta-catenin-like repeat 226 265 IPR000225 GO:0005515
Dod01g2419 702 Pfam Armadillo/beta-catenin-like repeat 311 349 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2419 Dod-Chr1 62975944 62981700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2419 288 508 U-box Gene Family AT2G23140 30.435 3.01e-15 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dod01g2419 BTB 6.8e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2419 - - sind:105165291 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2419 01 62975944 62981700 Dod01g2419 01 62975944 62981700 ECH