Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2409 ATGGCTGCATCGCCAAGTGGCAGCTTTCAAAGCATGTCGCAGTGGGGTGCTGGGTGCTACAGTGGGGCAATTAAGACTCGGAAGAGTACAGTTCAGGCAATAGTGGAGGTAAGCATTGAGGAGGAGTCTCTCCAGAGAAGCCAGCAACTTAGAGAGCTTTACGAGTCACTGTCAGCCGGAGACACAGAACCACCAACTCGCCGACCTTGTGCTGCCTTGTCACCGCCGGAGGACCTAACCGAATGCGAATGGTTCTACTTGATGTGTGTCTCCTTCTCCTTTTCTCCTGAGACAGGACTGTATGTTGAGAGCTTTTTTTGTTTTTGTTTGTCTTCACTCCCTCTTAATCAAGGAATTCTCGCAATGATTCATGTTGTACTGCTGCAACTAATAGAATCTTATGCAACAACTGCTTTTCCAAGGTTTGAAGTGCAAGAGGACTTTGATTTCATCGAACTTGCAAAGAGCTTCTTCATAGGTCACCTCCGCCTTCCCACGCCAAAGCAAGCCCTATCGAAGCACTCTACCTCCGCTTCCTCATACCCTGTCATTGCAGTGTCCAATATTCCCAACGACCATGAGAACATGGAAATGGAAAAACGTGACAAAGAAGAAGCTGACTTATTGAATTCCGAATTAGCAGAAACATTACTCCTAAGGAGTTTCCCACCAAATGAAGAACTGATGGAGCTGCAGGACATGTTGGAGGCCGATAGCTCCAATCTCAGCTGGGTTGGAGCTGCTTCAATAGTAGTTGCACCATTGGAAGACTTCTTAATACAAGGCAACGAACATTACTCTCAAACAGTGTCCACCATCCTCCAAAACAGCTACGGCCAGTGGCTAGAGTCACCCTCTACCAGCCACCTTGCCGGTTCCTTCCACTCGGCTTTTGCCAAGTGGAGCACGATGTCCTACAACTACCACCTCCACATGCCAGTGGCTGACACACCCCAGTGGCTCTTGAAGTACATATTGTTTAGGGTCCCATACCTACATGCCAAGCAACACCGCCACAATTCACCACAAACCCCAGACTGGGGGAGGGGCCCGCCACGAGATGAGCCGAATGTCGGCCACGTGGCGGCAGAGCGTCGCCGGCGTGACAAGCTGAATGAGAAGTTCGTGACATTGAGGTCATTGGTGCCATTTGTGACCAAAATGGACAAGGCCTCTATATTAGGGGACACTATTGAGTACGTGAAACAACTGCAAGCTAGAGAAGATAAGGGACCTAGAAGCACGTAG 1248 0.4936 MAASPSGSFQSMSQWGAGCYSGAIKTRKSTVQAIVEVSIEEESLQRSQQLRELYESLSAGDTEPPTRRPCAALSPPEDLTECEWFYLMCVSFSFSPETGLYVESFFCFCLSSLPLNQGILAMIHVVLLQLIESYATTAFPRFEVQEDFDFIELAKSFFIGHLRLPTPKQALSKHSTSASSYPVIAVSNIPNDHENMEMEKRDKEEADLLNSELAETLLLRSFPPNEELMELQDMLEADSSNLSWVGAASIVVAPLEDFLIQGNEHYSQTVSTILQNSYGQWLESPSTSHLAGSFHSAFAKWSTMSYNYHLHMPVADTPQWLLKYILFRVPYLHAKQHRHNSPQTPDWGRGPPRDEPNVGHVAAERRRRDKLNEKFVTLRSLVPFVTKMDKASILGDTIEYVKQLQAREDKGPRST* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2409 415 MobiDBLite consensus disorder prediction 337 365 - -
Dod01g2409 415 PANTHER TRANSCRIPTION FACTOR TT8 11 100 - -
Dod01g2409 415 PANTHER TRANSCRIPTION FACTOR TT8 144 407 - -
Dod01g2409 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Dod01g2409 415 PANTHER TRANSCRIPTION FACTOR TT8 11 100 - -
Dod01g2409 415 PANTHER TRANSCRIPTION FACTOR TT8 144 407 - -
Dod01g2409 415 Pfam Helix-loop-helix DNA-binding domain 360 405 IPR011598 GO:0046983
Dod01g2409 415 Gene3D - 354 410 IPR036638 GO:0046983
Dod01g2409 415 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 105 IPR025610 -
Dod01g2409 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 358 409 IPR036638 GO:0046983
Dod01g2409 415 SMART finulus 361 410 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2409 Dod-Chr1 62852690 62862499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2409 10 407 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 39.036 1.48e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g2409 bHLH-MYC_N 5e-08 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2409 - - gmx:100786815 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2409 01 62852690 62862499 Dod07g0539 07 7177504 7186464 PCT