Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2372 ATGCTAGCTTCACTCATGAGGTTGAGGTTATTGCTAGTGTTAGGCACTGTTAACCTTGTTGCCTTGAGGGGTTATTGTACTGCTACTACTAATTTGGAAGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGGAGTCTTTATGATCACTTGTTTGGTTCGAAAGGGAAGAAGCTGAGTTGGCCGATTCGCCAGAAAATTGCTCTGGGTACTGCTAAGGGTTTGGCTTATTTGCATTATGGGGCTCAGCCTTCAATCATACATAGGGATATTAAAGCCAGTAACATTCTCCTTGATGAGAAATTTGAGGCCAAGGTTGCGGACTTCGGGTTGGCTAAGTTCAACCCTGAGGGGATGACACATATGAGCACTAGGGTGGCTGGTACAATGGGGTATGTTGCTCCTGAGTATGCACTTTATGGGCAATTGACAGAGAGGAGTGATGTGTTTTCTTATGGTGTTGTGCTTCTTGAGCTATTGAGTGGGAGGAAGGCTCTTGAGATGGACAGTGATGGCAAACCAGGTGCACTCACTGACTTGGCTTGGTCATTGGTTAGGGACGGTAACACATTGGATGTTATTGAAGATGGCATGCCAGAACCTGGTCCACCACAGGTTCTTGAGAAGTATGTGCTTGTTGCTGTGCTGTGTTCTCATCCTCAGCTACATGCTAGGCCAACAATGGACCAGGTTGTTAAGATGCTGGAGACCGATGATGAGTCTGTGCCCTCAATAATGGAAAGGCCAATCCCTTTCATTGCAGGGAGGATTGATATTGAGAAATCTGTGAGCAGCAACTCGAGTCAGCTTTGTAGTCCAACAGGTTATCAAGCATACACAATGAAAGCTCGCCGTCTTTCTGATTCTAATAAGAAAGAAGAAGAAGGAAGCTCGGAGTCAGGGACTGTAAGCACGGATTGA 927 0.4563 MLASLMRLRLLLVLGTVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSKGKKLSWPIRQKIALGTAKGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSYGVVLLELLSGRKALEMDSDGKPGALTDLAWSLVRDGNTLDVIEDGMPEPGPPQVLEKYVLVAVLCSHPQLHARPTMDQVVKMLETDDESVPSIMERPIPFIAGRIDIEKSVSSNSSQLCSPTGYQAYTMKARRLSDSNKKEEEGSSESGTVSTD* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2372 308 SMART serkin_6 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2372 308 PANTHER OS01G0253100 PROTEIN 17 283 IPR045271 GO:0004714|GO:0006468
Dod01g2372 308 SUPERFAMILY Protein kinase-like (PK-like) 9 256 IPR011009 -
Dod01g2372 308 Gene3D Transferase(Phosphotransferase) domain 1 44 249 - -
Dod01g2372 308 MobiDBLite consensus disorder prediction 287 301 - -
Dod01g2372 308 MobiDBLite consensus disorder prediction 285 308 - -
Dod01g2372 308 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dod01g2372 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 88 100 IPR008271 GO:0004672|GO:0006468
Dod01g2372 308 Pfam Protein tyrosine and serine/threonine kinase 10 237 IPR001245 GO:0004672|GO:0006468
Dod01g2372 308 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 17 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2372 Dod-Chr1 62315184 62316110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2372 17 283 Receptor kinase-like Gene Family AT2G48010 75.836 3.40e-148 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Dod01g2372 PK_Tyr_Ser-Thr 9.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2372 - - gmx:100786298 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2372 01 62315184 62316110 Dod01g2372 01 62315184 62316110 ECH
Dod01g2372 01 62315184 62316110 Dod07g0501 07 6580584 6582794 ECH
Dod01g2372 01 62315184 62316110 Dod07g0501 07 6580584 6582794 PCT