Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2340 ATGGAGCTTGCTTTGAGCTTAGGTGAAGCACCCAAGTCGTTCTCTCTGCTAGACAACACAGCGAAACTACCCAACAAAGACCCAGTGGGTTTCTGCATAGCACTTGGAGCAGGAGCTGGTAATTTCGCTGGAAAATCATCTTCATCAGAGGATAGAAGGGTCGATGAAGAGAGAAGGGGTTCCTCAGATCCACCCGTTCAGCTCGACCTTCTCCCTTCAACGCCCGTCCTTCGCTCCCAGCCTTGTTCACACCTCCGAATTCCTTGGCTCACCGATGCACTGGGTTTGGAACGCGTGGCGTCCGAGGCACCGCTGGGGAGGGCGTTGGACGTGAACTGTTTCCCGGTGGCTCCGGCGGCGGAGGAGGCCGACGACGGCGGTGCACTGTCGTCCCCGAACAGCGCGGTGTCGTCTTTTCAGATGGAATTTTGCCTTAGGAACAGTAATGCAGACGCAGCAGCAGGAGTAGGCAGGAACAACAGAAGAGAGCATGAAGGTGAAGGTGCCGACAGAGCCAGCGACGACGATGAAAACGGCTCAACCAGGAAGAAACTCAGACTCTCAAAGGAACAATCTGCGTTCCTTGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCTAAGCAGAAGCTGGCACTTGCAAAACAGTTAAACCTTCGTCCTCGTCAAGTAGAAGTCTGGTTTCAGAACAGAAGGGCAAGGACGAAGTTGAAGCAGACGGAAGTGGATTGCGAGTACTTGAAGAGATGCTGTGAGACATTGACGGAAGAGAATAGGAGGCTGCAGAAGGAGCTTCAAGAATTGAGGGCTTTGAAAACTTCTCAACCTTTCTACATGCAGCTTCCGGCCACCACTCTCACCATGTGCCCTTCTTGTGAAAGGGTCGCCACCAACACCACCACCACCGTACCCACCGCCATCGCCGCCGTCCCTAACCAAACTGTCCCCCCCGCCAATAACAATGACGGTTCTCAAATTCCTTCCGCGTTGTCTCTCGGCAAGCCCAGATTGCTGCCCTTCCCTAATGGTCAGGCCCAACCGAAGCAGGCCCAAAAGGCCCATCAGATGGCTTCGTGA 1077 0.5385 MELALSLGEAPKSFSLLDNTAKLPNKDPVGFCIALGAGAGNFAGKSSSSEDRRVDEERRGSSDPPVQLDLLPSTPVLRSQPCSHLRIPWLTDALGLERVASEAPLGRALDVNCFPVAPAAEEADDGGALSSPNSAVSSFQMEFCLRNSNADAAAGVGRNNRREHEGEGADRASDDDENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTTTTVPTAIAAVPNQTVPPANNNDGSQIPSALSLGKPRLLPFPNGQAQPKQAQKAHQMAS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2340 358 CDD homeodomain 182 239 IPR001356 GO:0003677
Dod01g2340 358 ProSiteProfiles 'Homeobox' domain profile. 178 238 IPR001356 GO:0003677
Dod01g2340 358 SUPERFAMILY Homeodomain-like 175 239 IPR009057 -
Dod01g2340 358 MobiDBLite consensus disorder prediction 311 328 - -
Dod01g2340 358 MobiDBLite consensus disorder prediction 311 358 - -
Dod01g2340 358 PANTHER - 5 316 - -
Dod01g2340 358 Pfam HD-ZIP protein N terminus 66 139 IPR006712 GO:0005634
Dod01g2340 358 Pfam Homeobox associated leucine zipper 238 272 IPR003106 GO:0006355|GO:0043565
Dod01g2340 358 SMART HOX_1 180 242 IPR001356 GO:0003677
Dod01g2340 358 ProSitePatterns 'Homeobox' domain signature. 213 236 IPR017970 GO:0000981|GO:0006355
Dod01g2340 358 MobiDBLite consensus disorder prediction 154 187 - -
Dod01g2340 358 MobiDBLite consensus disorder prediction 42 73 - -
Dod01g2340 358 Coils Coil 244 274 - -
Dod01g2340 358 MobiDBLite consensus disorder prediction 344 358 - -
Dod01g2340 358 MobiDBLite consensus disorder prediction 48 63 - -
Dod01g2340 358 MobiDBLite consensus disorder prediction 157 187 - -
Dod01g2340 358 Gene3D - 186 236 - -
Dod01g2340 358 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 5 316 - -
Dod01g2340 358 Pfam Homeodomain 182 236 IPR001356 GO:0003677
Dod01g2340 358 SMART halz 238 281 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2340 Dod-Chr1 61661450 61663538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2340 89 294 Homeobox Transcription Factor Family AT3G60390 57.078 3.93e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod01g2340 HD-ZIP_N 6.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2340 K09338 - gmx:100776113 412.535