Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2339 ATGGGGGACGAGACTTCAGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCTGACCCAGCAACCATAGCCACTGATGCTTTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGAGAATCAGTGAAGCTGTGAGGCTGAGGGCGCGGCAACGGTGGCGGTGGCGGCATATACCTATCCCTCCACCTGAAGTTCAGCTTCACATCCCACATGAAGCGTCGCGGCATTTTCATATCCCTCCTGAGGCGCGAAACATCTCGATGGAATTGAATCAGTTCTTGGTCAATTCTGGTAATGGGAGTGCGTTGCAGGCTGGTGAAGGCAGTGTGACAGCTGAGGAGAGGACTGAGGCAGCACCAAAAGCTTGTGAGAACAACAATGGTGTTATGGAGGATGCTTTGTCAGAGAAGAAGGATGATGTTGAAAAGGGTGGCGGCAATGATGGGGACTTCTTTGATTGTAATATCTGTTTGGATTTGGCTAGAGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGCCTGTATCGATGGCTGCATCTGCACTCGGATGCTAAGGAGTGTCCAGTTTGCAAGGGAGAGGTGACTTTCAAGAATGTTACCCCTATTTATGGTCGTGGGAACAATGCCCGCGGTCCTGAGGATGATTCCACTCTTAAAATCCCTCAGAGGCCTCAAGCCAGGCGTGTGGAGAGCCTGAGACAAACTATTCATAGAACACTCCCTGTGGAAGAGATGATTCGGCGTCTTGGGAGCAGAATTGATCTCACTCGTGATTTAGTTCATCAGCATGAACCTGACAATGCTCGTGAAACAGCAGAGAGAACTAGTTCCTTGCTAAGTAGGTTCTTGACATCTCGTGGTATAAGGAGAGAGCAGAATCTTGGGGCACCCCCAGATGATGTAGTGGGTTTTACACAGAACAGTGTTACTGGTCCTGAGGCTGGGGATCACCGCAGGGCCCAATCTATTTTACTTCGAAGAACACAGTCACATAGGGCAACGCTTTCTACCCTTTCATCAGCACTGAATTCTGCTGAAAGGTTAGTTGAGGCATATTTCCGTAGCCATCCATTAGGTAGAAACCAAGAGCAGCCTCCTCCAGTTGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTTATAAATTCCGAGAGTCAGGTGGACACTGCTGTAGAAATTGATTCCATGGTATCTCTGTCAACATCCTCGTCTAGGAGGAGAAACGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCTCGCGCTCCAAGGCGAAGACGTTTGAACTGA 1308 0.4855 MGDETSDAMNLDLNLGPGPDPATIATDALNLDDWIEEPLQRISEAVRLRARQRWRWRHIPIPPPEVQLHIPHEASRHFHIPPEARNISMELNQFLVNSGNGSALQAGEGSVTAEERTEAAPKACENNNGVMEDALSEKKDDVEKGGGNDGDFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTFKNVTPIYGRGNNARGPEDDSTLKIPQRPQARRVESLRQTIHRTLPVEEMIRRLGSRIDLTRDLVHQHEPDNARETAERTSSLLSRFLTSRGIRREQNLGAPPDDVVGFTQNSVTGPEAGDHRRAQSILLRRTQSHRATLSTLSSALNSAERLVEAYFRSHPLGRNQEQPPPVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2339 435 Pfam Zinc finger, C3HC4 type (RING finger) 155 195 - -
Dod01g2339 435 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
Dod01g2339 435 SMART ring_2 155 195 IPR001841 -
Dod01g2339 435 PANTHER BNAC04G52420D PROTEIN 8 434 - -
Dod01g2339 435 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Dod01g2339 435 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 434 IPR045103 GO:0005783|GO:0006511|GO:0061630
Dod01g2339 435 MobiDBLite consensus disorder prediction 403 435 - -
Dod01g2339 435 MobiDBLite consensus disorder prediction 297 322 - -
Dod01g2339 435 CDD RING-HC_AtRMA_like 153 197 - -
Dod01g2339 435 SUPERFAMILY RING/U-box 151 208 - -
Dod01g2339 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 248 IPR013083 -
Dod01g2339 435 MobiDBLite consensus disorder prediction 413 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2339 Dod-Chr1 61617333 61619875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2339 1 426 C3H Transcription Factor Family AT3G58030 52.573 2.50e-136 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2339 K10666 - gmx:100811099 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2339 01 61617333 61619875 Dod01g2339 01 61617333 61619875 ECH