Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2314 ATGGAGGATTTGAAGAAGAGAAAGCTGGACGAGGCAGGGAACGGTGGTGATTCAGCTTCAAAGGAAGAGCTTCGTGTCCTCATCGAACCCCTCCCTAAACCCCAGCTCGTCGACCTTCTCGCTAAGCTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCCGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACCTTGCGTGCTGCATTTCAAGAGCATGGGGAAATTGAGGAAGGGGCTGTGATCTATGATAAATCAACAGGAAAATCCCGCGGCTATGGTTTTATCACTTACAAACATATTGAATCAACTCAGCGTGCATTGAGAGCACCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTGGCTTGTGAGGGCCTTAGTGGATCAAGTAATGCTCCTGATCTTGCCCAGAGGAAGCTTTACATTGGAAGCTTATCACCAGAAGTCACAAGTGAAATGCTGCTTAACTATTTTGCAAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGACAAGGATACAAATGAATCACGTGGGTTTGGCTTTGTTACATACAAGTCAGCAGAATCTGCAAAGAAGGCCATTGATGACCCAGAAAAGACTCTTGGGGAGAGGAATATAATGGTAAAATATGCTGATTCGCATCATAAGGGTAAAACAGGCCAACCGGCATTTCCTGCAGGAGTGGTTCCAATGGCAGCCTTACCTATGGCTCCAGGATATGTGCAGCCTGGAAAAGCTCACATTGGTGCTGCCCCTCCAGGTTACCCTTACCCCCAAACTGTAGCACCATATCCTGCATCTTCTTATCCAAGCCCTCCAACTGCACCATCCCCTTATCCAACACAAGGGCATGTTCCTTATCCTCCAGTTTCTGTGAAGAAAGATCAATTTGGAATCCCGCCAACTCAACCTGTGGGAATGAATAACTATCCTTATTACTATCCCAAGCAATAA 1014 0.4566 MEDLKKRKLDEAGNGGDSASKEELRVLIEPLPKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTTSETLRAAFQEHGEIEEGAVIYDKSTGKSRGYGFITYKHIESTQRALRAPSKLIDGRLAVCNLACEGLSGSSNAPDLAQRKLYIGSLSPEVTSEMLLNYFARHGEIEEGSVAYDKDTNESRGFGFVTYKSAESAKKAIDDPEKTLGERNIMVKYADSHHKGKTGQPAFPAGVVPMAALPMAPGYVQPGKAHIGAAPPGYPYPQTVAPYPASSYPSPPTAPSPYPTQGHVPYPPVSVKKDQFGIPPTQPVGMNNYPYYYPKQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2314 337 MobiDBLite consensus disorder prediction 286 305 - -
Dod01g2314 337 CDD RRM_RBM24_RBM38_like 65 140 - -
Dod01g2314 337 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 13 337 - -
Dod01g2314 337 SMART rrm1_1 157 229 IPR000504 GO:0003723
Dod01g2314 337 SMART rrm1_1 66 138 IPR000504 GO:0003723
Dod01g2314 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 233 IPR000504 GO:0003723
Dod01g2314 337 Gene3D - 2 142 IPR012677 -
Dod01g2314 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 133 IPR000504 GO:0003723
Dod01g2314 337 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 13 337 - -
Dod01g2314 337 SUPERFAMILY RNA-binding domain, RBD 58 142 IPR035979 GO:0003676
Dod01g2314 337 SUPERFAMILY RNA-binding domain, RBD 151 241 IPR035979 GO:0003676
Dod01g2314 337 Gene3D - 143 243 IPR012677 -
Dod01g2314 337 MobiDBLite consensus disorder prediction 1 22 - -
Dod01g2314 337 MobiDBLite consensus disorder prediction 286 323 - -
Dod01g2314 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 226 IPR000504 GO:0003723
Dod01g2314 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 133 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2314 Dod-Chr1 61253460 61257750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2314 152 268 C2H2 Transcription Factor Family AT2G19380 34.677 3.33e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2314 K12741 - gmx:100776344 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2314 01 61253460 61257750 Dod01g2314 01 61253460 61257750 ECH