Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2311 ATGGGTCCAGGCACTACCACCAAACAACCACCACCAACACCCTCCTCCCCTACAAACTCTTCCTCCTGTGAGTCCCTCAATGGCTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGGGTGTCCAATCCTGCAACCCCTTCTTCTTCCTCTGCGGGTCCCAAGAAGGGTAGGGGCGGGTCGGTTAACTCTGCTCAGCCACCGAGGTGCCAGGTTGAAGGCTGCAAAGCAGATCTGAGTGATGCAAAGGCTTACTATTCTAGGCATAAGGTGTGTGGCATGCACTCAAAATCACCTACTGTCATTGTTGCTGGACTCCAACAGAGGTTTTGCCAACAGTGTAGCAGATTTCATCAGCTTCCTGAATTTGATCAAGGGAAAAGAAGTTGCCGTAGGCGACTTGCTGGGCATAATGAGCGTCGGAGAAAGCCTGCACCAAGCTCCCTCTTAAGTTCTCGTTATGCGAGACTTTCTTCATCTATTTTTGATAATAGTGGCAAAGGTGGCAGCTTCCTGATGGAATTTGCTTCGTACCCGAAGCTGAGTCTGAGAAATTCACTTCCAAATCCCAGATCATCTGAACCAGTTGCTGGACACCAAACCGCGACACTTAGCTGGCAGGGCTATTCAGAGACACCATCTGACCTTTTCATGCAAGGTTCAGTGGGCGGGACAAGCTTCCGTGGTCCCAGACACCCTCCTCAACCAGGGGAAAGTTATGCTGGCATCGCAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGTAACACAGCACCAAGTCTTGGGTTGAATAACACGTGGAATTTCAACTGCACACCCATGACACAACTTGCTGTATCTTCTAATGATGCTGATGCAGCCATCCATCAACTTCCAAATACCTCATGGTGTTTCAAGGGCATTGATCCTGACAATTGTTCAACCACCGTTGTACGTGATCTAGGCCTGGGTCAAATCTCACAGCTTCACGATAGCCAACTTCCCGGTGAGCTCGATGTGCCGCAACAAGGAAGGCTGGCATTATATGGATCTAGAGCAGTCCGGGGCCTATGA 1074 0.4953 MGPGTTTKQPPPTPSSPTNSSSCESLNGLKFGQKIYFEDVGVSNPATPSSSSAGPKKGRGGSVNSAQPPRCQVEGCKADLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPAPSSLLSSRYARLSSSIFDNSGKGGSFLMEFASYPKLSLRNSLPNPRSSEPVAGHQTATLSWQGYSETPSDLFMQGSVGGTSFRGPRHPPQPGESYAGIADSSCALSLLSSQTWGSSNTAPSLGLNNTWNFNCTPMTQLAVSSNDADAAIHQLPNTSWCFKGIDPDNCSTTVVRDLGLGQISQLHDSQLPGELDVPQQGRLALYGSRAVRGL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2311 357 SUPERFAMILY SBT domain 69 150 IPR036893 GO:0003677|GO:0005634
Dod01g2311 357 MobiDBLite consensus disorder prediction 41 70 - -
Dod01g2311 357 Gene3D - 61 132 IPR036893 GO:0003677|GO:0005634
Dod01g2311 357 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 15 345 - -
Dod01g2311 357 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 345 IPR044817 GO:0003677
Dod01g2311 357 MobiDBLite consensus disorder prediction 1 26 - -
Dod01g2311 357 Pfam SBP domain 71 144 IPR004333 GO:0003677
Dod01g2311 357 MobiDBLite consensus disorder prediction 43 58 - -
Dod01g2311 357 MobiDBLite consensus disorder prediction 1 17 - -
Dod01g2311 357 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2311 Dod-Chr1 61232588 61237146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2311 29 330 SBP-box Gene Family AT2G42200 45.181 5.43e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dod01g2311 SBP 1.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2311 - - gmx:100780949 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2311 01 61232588 61237146 Dod01g2311 01 61232588 61237146 ECH
Dod01g2311 01 61232588 61237146 Dod07g1246 07 32891553 32896434 PCT