Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2306 ATGAGTCTCCAAAGCAACTTCCCATCCCTTTTGGTTCCCTTAGCTGCAGTCTTTGCGTCTTTGTACCTCATAAATCCAAATGAACAGCTTCTCAACATTTTCGAATACTTCAGTCTCACAACTTCATCATCATCTGTGCATTCGACACTACCTTTTAACCTCATACACCATCATCACAAGAAACACACTGATAGTGGAAATGCAGGTTCCATTTGTGATGATTTTCCACCAGGCATTCCACCTCCAAGTACCAATACCACTTTCTATCTTTGTGTTGACAGAAAAGGGTGTTGTAATTTCACAACAGTACAAGCAGCAGTGAATGCAGTTCCAGATTTTAGCGAAAAAAGAACCACAATATGGATCAACAGTGGCGTCTACTATGAAAAAGTCCTGGTGCCTAGAACCAAACCCAACATTACATTTCAAGGACAAGGCTACACTTCAACTGCAATTGCATGGAATGATACTGCAAAGTCCGCAAATGGCACATTTTATAGTGGCTCCGTACAAGTTTTTGCCACCAACTTCATTGCTAAGAACATAAGCTTCATGAATTTAGCTCCAATGCCAAGTCCAGGGGCTGAAGGAGCGCAAGCAGTAGCCATTAGAATATCAGGAGATCAAGCTGAATTCAGGGGTTGTGGATTCTTTGGAGCACAAGACACCCTTCATGATGATAAGGGCCGCCATTACTTCAAGGATTGCTATATCCAAGGCTCCATTGATTTCATATTCGGCAATGGAAGGTCACTCTATGAGAATTGTCAATTAGTGTCAATAGCGAATCCAGTACCCCCAGGACAAAGAAGCATAAATGGTGCTGTTACAGCACATGGAAGAGTTTCCATGGATGAAAATACAGGGTTTGCATTTGTGAACAGCACAATAGGAGGCAATGGGAGAATATGGTTGGGTAGGGCATGGAGGCCATATTCCCGTGTTGTTTTTGCATTCACATCAATGTCAGATATCATCGCCCCTGAAGGTTGGAATGATTTCAATGACCCTACAAGGGATCAGACCATATTCTACGGGGAGTACAATTGCTCCGGGCCCGGGGCTAATATGAATTTGAGGGCATCTTATGTACAGAGATTAAACGATACACAAGCTCTTCCATTCCTCAACACAAGTTTTATTGATGGCGACCAATGGCTGGAATCTTACAAATAA 1176 0.426 MSLQSNFPSLLVPLAAVFASLYLINPNEQLLNIFEYFSLTTSSSSVHSTLPFNLIHHHHKKHTDSGNAGSICDDFPPGIPPPSTNTTFYLCVDRKGCCNFTTVQAAVNAVPDFSEKRTTIWINSGVYYEKVLVPRTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFATNFIAKNISFMNLAPMPSPGAEGAQAVAIRISGDQAEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNGRSLYENCQLVSIANPVPPGQRSINGAVTAHGRVSMDENTGFAFVNSTIGGNGRIWLGRAWRPYSRVVFAFTSMSDIIAPEGWNDFNDPTRDQTIFYGEYNCSGPGANMNLRASYVQRLNDTQALPFLNTSFIDGDQWLESYK* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2306 391 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 9 390 - -
Dod01g2306 391 Gene3D - 84 391 IPR012334 -
Dod01g2306 391 Pfam Pectinesterase 92 384 IPR000070 GO:0030599|GO:0042545
Dod01g2306 391 SUPERFAMILY Pectin lyase-like 88 388 IPR011050 -
Dod01g2306 391 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Dod01g2306 391 PANTHER PECTINESTERASE 8-RELATED 9 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2306 Dod-Chr1 61192833 61196803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2306 61 388 Carbohydrate Esterase AT1G05310 71.341 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2306 - - ahf:112696095 687.952