Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2291 ATGAAAGCGGTTGGAAACTACGATGGGGTGAATGGCAGTGACAGTGAACTAAGTCTATCTATAAACAGAATGAATAACCCAATTAGCTTTTCATCAGGAGGTCCTTCTTCCTTGGGCATGCTGTCTCAGATATCTAAAATGGGGAGTGAGGGCATTGGAGCAACTATGCTTGACGATAGGAGGCAGGGAGGTAGCAATGGATTCCCTTATGGTTCTTGGAATATTGAGACATCACACCTCTCCAGTGGCTCCAAGAGGGAGCGTAGTAGTAATGATAAGTTATTTACTGTTACTGATGCTGAGAGTGGAGAGCTTAGAAATCAAGTTCATACATTATCGCAAAACCAGAGTTTTTCAAAAGCCTCATCCGAGATGTTTGCTATGGAGAATATGATTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCGAAGAGAGGCTGTGCTACTCATCCTCGAAGCATTGCGGAAAGGATTAGAAGAACTCGAATCAGTGAACGAATGAGAAAATTACAAGAGCTTGTTCCAAATATGGACAAGCAAGCCAGCACAGCAGAGATGTTGGACCTGGCTGTAGTGTACATTAAAGATCTTCAGAAACAATTCAAGAAACTCAGTGAAAAACGGGATAAATGCAAATGTATAAACATGCAGAGGTCGGATTCAAAGAAAACTGCTTGA 681 0.4185 MKAVGNYDGVNGSDSELSLSINRMNNPISFSSGGPSSLGMLSQISKMGSEGIGATMLDDRRQGGSNGFPYGSWNIETSHLSSGSKRERSSNDKLFTVTDAESGELRNQVHTLSQNQSFSKASSEMFAMENMIQFPDSVPCKIRAKRGCATHPRSIAERIRRTRISERMRKLQELVPNMDKQASTAEMLDLAVVYIKDLQKQFKKLSEKRDKCKCINMQRSDSKKTA* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2291 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 215 IPR036638 GO:0046983
Dod01g2291 226 Gene3D - 149 222 IPR036638 GO:0046983
Dod01g2291 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 198 IPR011598 GO:0046983
Dod01g2291 226 SMART finulus 154 204 IPR011598 GO:0046983
Dod01g2291 226 Coils Coil 195 215 - -
Dod01g2291 226 Pfam Helix-loop-helix DNA-binding domain 153 199 IPR011598 GO:0046983
Dod01g2291 226 PANTHER TRANSCRIPTION FACTOR BHLH130 1 218 - -
Dod01g2291 226 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2291 Dod-Chr1 60849117 60851546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2291 39 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 54.118 1.09e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g2291 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2291 - - aip:107625483 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2291 01 60849117 60851546 Dod01g2291 01 60849117 60851546 ECH
Dod01g2291 01 60849117 60851546 Dod10g1787 10 39051701 39055429 ECH
Dod01g2291 01 60849117 60851546 Dod03g3010 03 62433953 62438505 ECH
Dod01g2291 01 60849117 60851546 Dod07g1212 07 31716027 31718584 PCT