Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2285 ATGGAGCAAGCTACGGGAGCTTTGCGTGGATCCACTCACCACGACGTCGTATTGGAGTCCATTCAATTCAACGAAGAAATCCGGGGAATCATGGGGCCGGCGCCGGCGCCGGTGCCGGTGCCGGAAAACGCCAGCTCCTTCACCGCGCTGCTGGAGCTTCCTCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCGGACTGCAAACCTCCGCCGCCGTGCCACGTCAGCGCGACTCACGAACCCTACATGCTCGACTCCTTCGGCGGCAATTTGACCTTCCCTTCCAACGCCGCGCTGATCGAACGCGCCGCCAAGTTCTCCGTCTTCGCCGGCGATAATTCGCAGCCGGTGGAGGCCAGCCTTGCTCAGGCAGGCGGCTCCGGCGCGGTGAAGAACGAGCCGCAGGAGTCCGATTCGAACCCGTGCTCCACGCAAGGTTGCGTTTCGGATCCCGCGGTTGAGAACAAGAATCAGAGAACCTCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAGGGATCGTTAAAGAAGAGCAAGAACGTCGCCGATGAAACCTCCGGCGACGGCGAGAAGCTTCCCTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCCACAGACAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCCGGCTGCAACAAGATATCAGGAACGGCGTTGGTTCTGGATGAAATCATCAACCATGTGCAATCTTTACAACGTCAAGTGGAGTTCTTATCAATGAAACTGGCAGCTGTTAACCCAAGAATGGATTTCAGCCTAGATAGCTTATTGGCTACTGATGGGTCATCCGTAATGGACAGCAACATAACCAGCATGGTTGCTCCTCTCATGTGGCCGGAAATCCCATTCAATGGTAATAGACAGCATTATCAGCAACAATGGCAATTTGATGCATTCCACCAACCACTTTGGGGAAGGGAAGAAGACAACCATAATTTCATGACTCCAGAAAACTCACTTTTGAGTTATGACTCATCAGCAAATTCAGAGTCAGTTGGAAACCTGGATTTTCTTCAGCCAGGAAGGAAGAAGAATTGGTATGCTATTCTTATATGA 1119 0.5317 MEQATGALRGSTHHDVVLESIQFNEEIRGIMGPAPAPVPVPENASSFTALLELPPTQAVELLHSPDCKPPPPCHVSATHEPYMLDSFGGNLTFPSNAALIERAAKFSVFAGDNSQPVEASLAQAGGSGAVKNEPQESDSNPCSTQGCVSDPAVENKNQRTSKRKEREKKVKGSLKKSKNVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRMDFSLDSLLATDGSSVMDSNITSMVAPLMWPEIPFNGNRQHYQQQWQFDAFHQPLWGREEDNHNFMTPENSLLSYDSSANSESVGNLDFLQPGRKKNWYAILI* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2285 372 Coils Coil 242 262 - -
Dod01g2285 372 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 17 353 IPR024097 GO:0006355
Dod01g2285 372 MobiDBLite consensus disorder prediction 172 188 - -
Dod01g2285 372 SMART finulus 208 258 IPR011598 GO:0046983
Dod01g2285 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983
Dod01g2285 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 271 IPR036638 GO:0046983
Dod01g2285 372 CDD bHLH_AtBPE_like 192 277 - -
Dod01g2285 372 Pfam Helix-loop-helix DNA-binding domain 206 253 IPR011598 GO:0046983
Dod01g2285 372 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 17 353 - -
Dod01g2285 372 MobiDBLite consensus disorder prediction 130 155 - -
Dod01g2285 372 Gene3D - 199 272 IPR036638 GO:0046983
Dod01g2285 372 MobiDBLite consensus disorder prediction 122 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod01g2285 Dod-Chr1 60770826 60777177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2285 10 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.179 3.31e-97 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod01g2285 HLH 1.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2285 - - gmx:100814124 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2285 01 60770826 60777177 Dod01g2285 01 60770826 60777177 ECH
Dod01g2285 01 60770826 60777177 Dod07g1209 07 31588471 31594742 PCT