Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dod01g2277 ATGGCTGACCCTTACTCTAACTTCTTCTCATCCTCCTCCTCTACCAGAGGAGGAGAAGGAGGAGGAGCACGCTTCTTCCAATTCAACAACCACCACATGATGAATCTCCACCACCACCACCACCACCACCATTTCCCACCTTCAAACCCTTCTCAACACCACCACCACAACCACCCTTACCCCCACAACCACAACACCACCACCACCTTCTTCAACCACATAAAAAACATAGACACCAACACCAACACCACCTTTTTTCACTACCACAGTGCTACTCCTACTTCCTACTCTTCTTATTCTTCCTCACCCCCTTCCCCTCCTCTCAGGCAAGAACTCCCTCTTCTTAGCCTCAGCCCCGCAAAGCAAGAGGAAGAGATCTTGCAAGAGCACGAGGACCCTTACTCTTGCACTGCCATGGATGTGGAGATCAATAATCCCAAAGAGGAAGAGGAGGAAGACGAAGAAGAAGAGGGTGATGGTGCTGCAGCAACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCAGTGCTGTCCTCCAATAATTCCTCGGAGGTAACTGACAAAGAGCATAATAATAATGGAGATGGTGGTGGTGGTGAGGACTCATCTGGGTTCATGGGGAACAGGCTCAACAAGGGGCAGTATTGGATCCCTACCCCTTCCCAGATTCTCATTGGTCCTACACAGTTCTCTTGCCCTGTTTGCTGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTAAGGGGAACCCAACCAACAGGCATGCTGAGGCTTCCTTGCTATTGTTGTGCACCAGGGTGCAGGAACAACATTGATCACCCAAGGGCAAAGCCCCTCAAAGATTTTAGAACACTCCAAACACATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCATTTGCTGTGAGGGGAGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTTTGGTATTGTATCTGTGGGTCTGATTTCAAGCACAAGAGGTCCCTTAAGGATCATATAAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAAGATGAACCAGCTTCTGAAGTAGAGCAAGAAAATGAGTCCACCCAGTAG 1200 0.4875 MADPYSNFFSSSSSTRGGEGGGARFFQFNNHHMMNLHHHHHHHHFPPSNPSQHHHHNHPYPHNHNTTTTFFNHIKNIDTNTNTTFFHYHSATPTSYSSYSSSPPSPPLRQELPLLSLSPAKQEEEILQEHEDPYSCTAMDVEINNPKEEEEEDEEEEGDGAAATVTVALHIGLPSPSAAEMASVLSSNNSSEVTDKEHNNNGDGGGGEDSSGFMGNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQENESTQ* 400
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dod01g2277 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 322 342 IPR013087 -
Dod01g2277 399 MobiDBLite consensus disorder prediction 37 61 - -
Dod01g2277 399 MobiDBLite consensus disorder prediction 1 25 - -
Dod01g2277 399 MobiDBLite consensus disorder prediction 178 215 - -
Dod01g2277 399 PANTHER ZINC FINGER PROTEIN WIP2 91 399 IPR043584 GO:0003700|GO:0010468
Dod01g2277 399 SUPERFAMILY beta-beta-alpha zinc fingers 304 342 IPR036236 -
Dod01g2277 399 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 91 399 - -
Dod01g2277 399 MobiDBLite consensus disorder prediction 1 18 - -
Dod01g2277 399 ProSitePatterns Zinc finger C2H2 type domain signature. 240 260 IPR013087 -
Dod01g2277 399 MobiDBLite consensus disorder prediction 180 195 - -
Dod01g2277 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 238 265 IPR013087 -
Dod01g2277 399 SMART c2h2final6 322 342 IPR013087 -
Dod01g2277 399 SMART c2h2final6 238 260 IPR013087 -
Dod01g2277 399 Gene3D Classic Zinc Finger 237 260 - -
Dod01g2277 399 Gene3D Classic Zinc Finger 300 374 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dod01g2277 Dod-Chr1 60642953 60645969 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod01g2277 108 399 C2H2 Transcription Factor Family AT3G57670 67.901 5.39e-145 415
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod01g2277 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod01g2277 - - gmx:100813583 498.049
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g2277 01 60642953 60645969 Dod01g2277 01 60642953 60645969 ECH
Dod01g2277 01 60642953 60645969 Dod10g1780 10 38930193 38933026 ECH
Dod01g2277 01 60642953 60645969 Dod03g3000 03 62309558 62312117 ECH
Dod01g2277 01 60642953 60645969 Dod07g1202 07 31363013 31365589 PCT